DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and nvl

DIOPT Version :9

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001096509.1 Gene:nvl / 100125138 XenbaseID:XB-GENE-958000 Length:852 Species:Xenopus tropicalis


Alignment Length:964 Identity:398/964 - (41%)
Similarity:545/964 - (56%) Gaps:170/964 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DHLITIRVKKYLEEHIGETYLDVKQMTRELMQKY-PEYSRRKFGPFRQLVHQAFSIIS------- 66
            |..:..|:.:||..:....|:|:..:..:|.:.| .:|.|||...||..|.:.|.:||       
 Frog    11 DRRLKHRLTEYLSSNKCGGYVDIGVVAADLQRIYSADYGRRKQNAFRIQVEKVFKVISSENVIEA 75

  Fly    67 -------------ESYNLDKVSSSEEDCV-SEDSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISE 117
                         |..||:.:|    ||. |:|.|..|:::.|||.:.|||   ||......:..
 Frog    76 QEEAHLAKRAKRGEDGNLEILS----DCTDSDDYEDQPSSNHMNNSLLSLY---RKGNPDSLLET 133

  Fly   118 PIDISSGDENEDDSNTKTTNGDGVAAAAAPPP---------------PTPAVQGSALKRLMEEVP 167
            |      .:|:.|::|........:.||...|               |:.|::.:.|..|.|:..
 Frog   134 P------TKNDPDTSTPAHPSKNASVAATGVPQVTRTPEAGWFIDKTPSRAMKQNILIDLCEDSA 192

  Fly   168 EIAVAAKKVAKPNTIHVSSSEAIQKLHQV-VGNRAKNLSEDAVPRSKDHRNVPGLYQQLHQNQSR 231
            |::.:.:| ..|..:.:..||..:|..:. .|.::|:.|.|.                  ..:..
 Frog   193 EVSHSGQK-ENPPDLSLLESEKKRKTPKTRNGRKSKSKSSDV------------------DGEIE 238

  Fly   232 DRLRKFKRDL-EVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQLGLLPSRGLLLHGPPGC 295
            |||...|..| |:|..:..|.||||.:.||||:|:|:||::.||.|..||::|.||.||||||||
 Frog   239 DRLLSNKGKLPELQRSSVRFEDIGGNEDTLKEVCKMMIHMRHPEVYQHLGVVPPRGFLLHGPPGC 303

  Fly   296 GKTFLARAISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQ 360
            |||.||:||:|:|.:|::::.|||::.|:|||||:::||:|:||:..:||:|||||||||...|:
 Frog   304 GKTLLAQAIAGELDLPMLKVAATEMVSGVSGESEQKLRELFEQAVSSAPCILFIDEIDAITPKRE 368

  Fly   361 WASKDMERRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKE 425
            .||||||||||:||::.:|:|.:......|:||.||.|||.|||.|||.||||.||.:.||....
 Frog   369 VASKDMERRIVAQLLTCMDDLNSLAVTAQVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEGA 433

  Fly   426 RREILRIQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKN 490
            |:.||:..|..|.:....:|.::|.|||||||||||||...||..||                 |
 Frog   434 RKRILQTLCRKLKLPEPFDYCRLAHLTPGYVGADLMALCREAAMCAV-----------------N 481

  Fly   491 MTTVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATN 555
            ...:.|.:.:.:        |::..||||...|| ..:..:|:|:...:||              
 Frog   482 RVLIQLKEQQAT--------PEAAVEETAPQPEA-LALQAEKQTTGPAQSE-------------- 523

  Fly   556 GNSSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDN 620
                                                               ....||.|......
 Frog   524 ---------------------------------------------------LHRLLALLQEHTPL 537

  Fly   621 PPEEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYP 685
            |.||.  .:.|:.:.||:.|:..:|||||||||.||||.||.||||||:|||||.:|:|||||.|
 Frog   538 PEEEL--QSLCIEMDDFLGALPSVQPSAKREGFATVPDVTWADIGALEEIREELTMAILAPVKNP 600

  Fly   686 EMLERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQR 750
            |..:.|||.||:||||.|||||||||||||:|||:|:||||||||||:||||||||||||..|||
 Frog   601 EQFKALGLMAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQR 665

  Fly   751 ARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDP 815
            |.||:||||||||.|:|||:||  |..:.:..|:||||||||||:|.|:.|:|:|||||||||||
 Frog   666 ASNSSPCVIFFDEIDALCPRRS--GYESGASVRVVNQLLTEMDGLESRRQVFIMAATNRPDIIDP 728

  Fly   816 AILRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQ--TEGYTGADLAGLV 878
            |||||||||..||||.|..::|..|||..||:|.||.|..||||:.||..  .:.:|||||:.||
 Frog   729 AILRPGRLDKTLYVGLPPPADRLAILKTITKDGTRPPLEADVDLEAIAGDECCDCFTGADLSALV 793

  Fly   879 KQASMFSLRQSLNNGD--TNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLR 930
            ::||:.:|||.:...:  ||...:.|..:||:||..:::|||:::|:.:|:.||
 Frog   794 REASVSALRQEMLGLEPPTNRGQIKVSRRHFEEAFSKVKPSVSKKDQLMYENLR 847

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330 19/81 (23%)
SpoVK 271..919 CDD:223540 315/651 (48%)
AAA 287..418 CDD:278434 78/130 (60%)
P-loop_NTPase 679..>716 CDD:304359 28/36 (78%)
AAA 699..830 CDD:278434 100/130 (77%)
nvlNP_001096509.1 Nucleolin_bd 2..72 CDD:293330 18/60 (30%)
SpoVK 278..848 CDD:223540 320/665 (48%)
AAA 296..427 CDD:278434 78/130 (60%)
P-loop_NTPase 594..>630 CDD:304359 27/35 (77%)
AAA 614..744 CDD:278434 101/131 (77%)
Vps4_C <808..>839 CDD:286426 10/30 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 208 1.000 Domainoid score I2812
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H1902
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D169540at33208
OrthoFinder 1 1.000 - - FOG0000137
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23077
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2802
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.110

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