DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SMSr and samd8

DIOPT Version :10

Sequence 1:NP_648114.1 Gene:SMSr / 38823 FlyBaseID:FBgn0052380 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_001082939.2 Gene:samd8 / 100037314 ZFINID:ZDB-GENE-070410-30 Length:412 Species:Danio rerio


Alignment Length:428 Identity:213/428 - (49%)
Similarity:265/428 - (61%) Gaps:62/428 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 VAQWSIENVTSWATCMEHFSRTLLDCL-RQEAIDGEVLLSLTEEDVRDMRYKLGYKLTFGELKKF 118
            |..||.:.|..|  ..|...|..:|.| .:..:||..||.|||:|:|....:|   ...|::|:.
Zfish     9 VEGWSSKQVAVW--LREQGFREYVDLLCSKHRLDGPSLLCLTEKDLRSPPLEL---KVLGDIKRL 68

  Fly   119 WIAVLKLQ-----LLVKNSSAESVI--LGIE---------------CHGNGNSVYMPLASTGCGP 161
            .:|:.:||     |...:|||.|.|  .|.|               .|.||.     :|:.| |.
Zfish    69 SLAIRRLQKHYTTLTHSDSSALSKIDTGGTEQTLSNGYLERASIDHQHCNGT-----VATVG-GD 127

  Fly   162 PSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTAMSLGYSFVVTWITSLTMVIVHERVPD 226
            .|.|.        ....|.|       || :.|||:|||:...|:.:|..:||..||:|||||||
Zfish   128 HSYSN--------GKRKSHC-------GR-LDPEYWKTALGALYAMMVCGVTSFVMVLVHERVPD 176

  Fly   227 MKRYPPLPDIFLDNVPHIPWAFNMCEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRC 291
            |:.||||||||||:||.|||||.|.|....:|.::.::||..|::|.:|.||...|.||||||||
Zfish   177 MRTYPPLPDIFLDSVPRIPWAFAMAEACAVVLGSMLMLVLLMHRHRSILFRRLCNLTGTVFLLRC 241

  Fly   292 VTMLITSLSVPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTCGDYMFS 356
            |||.:|||||||.|||||.|          :.|....::.||..||||||||:.||.||||||||
Zfish   242 VTMFVTSLSVPGHHLQCSGK----------IYGDAWTKVQRALEIWSGLGMSLTGVHTCGDYMFS 296

  Fly   357 GHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRLFLYYH 421
            ||||.||:||||:|||||||..|:||::|:||:||||||||||||||||||:|||||:|||||||
Zfish   297 GHTVVLTMLNFFVTEYTPRNWNFIHTMSWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYH 361

  Fly   422 TLANNRALMQSDSKRTRVWFPMFSYFESSVDGMVPNEY 459
            ||||.:|...  |:|.|||||:||:||.:|.|.|||||
Zfish   362 TLANTQAYQH--SRRARVWFPLFSFFECNVLGPVPNEY 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SMSrNP_648114.1 SAM_SGMS1-like 55..126 CDD:188914 22/71 (31%)
PAP2_C 349..422 CDD:464150 60/72 (83%)
samd8NP_001082939.2 None

Return to query results.
Submit another query.