DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and AT3G29340

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_189580.1 Gene:AT3G29340 / 822592 AraportID:AT3G29340 Length:650 Species:Arabidopsis thaliana


Alignment Length:549 Identity:106/549 - (19%)
Similarity:177/549 - (32%) Gaps:188/549 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 SFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECT 385
            |.||.||.:||.....|..|...|   :|.|.||.:..|  |....|.::.:...|....|.||.
plant    42 SHKCKICGKSFECYQALGGHQRIH---RPIKEKLSKQEF--SEVYPRKSKLQKRPESSSSCYECK 101

  Fly   386 YASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSL 450
            ...       :...|:.|                  |..|..:|...|:   ::..::  ..|||
plant   102 VCG-------KIFGCYRG------------------LGGHTKLHRSTKR---ELASTQ--DENSL 136

  Fly   451 KAHKLIHSVVDKP-VFQCN------YCPTTCGRKADLRVHIKH------MHTSDVPMTCRRCGQQ 502
            ........:|.:| .|:.:      :|           |.:|.      .|:..:|.|.|.    
plant   137 LDSSEAKKIVSQPSSFKVSQEEKFLHC-----------VELKQDFSEPLSHSGALPSTLRS---- 186

  Fly   503 LPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIH----------------------- 544
                   ||..|:.....|: ||:|..:.|..:.|.:|..:|                       
plant   187 -------KLQTKTQWKSSCH-CKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDS 243

  Fly   545 ----------------LDEKPFHCDQ-------------------CPQAFRQRQLLRRHMNLVHN 574
                            .:||..||.:                   |.::.:.:::.|:      |
plant   244 LKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARK------N 302

  Fly   575 EEYQPP---------EPREKLHKCPSCPREF-THKGNLMRHMETHDDSANAREKRRRLKLGRNVR 629
            |:.:..         |..::||.|.:|.|:| |.|| :..|...|..:.|..|....|:  |...
plant   303 EKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKG-VYGHQRMHSGNHNRIEDENGLE--RIWG 364

  Fly   630 LQKDGTVITLIKDQYVDMDRDQEENEEDDNPES-----------YDLAEIEPENSEAEDADDDVE 683
            |:|...|.::.............|.|:.:..|:           ||.|.|  .|....|...|:|
plant   365 LKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASI--SNLPLGDGFMDLE 427

  Fly   684 TIVSDPIRQRIKPAPIIINKQARLAASEK-----QPMIINQRLRSQRGTKTFHIKEEPDNSDFTV 743
                      :||.|:....|.:..:|.|     :..:.:|.|.|.:....:.:..:|       
plant   428 ----------LKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKP------- 475

  Fly   744 EWQGDDGEVMVVELVNGDEEVLVKHEPSA 772
            |:..||.     .|::..|...:..:||:
plant   476 EYIEDDS-----SLLDSSEAKKIVSKPSS 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334
C2H2 Zn finger 296..316 CDD:275368
COG5048 321..>621 CDD:227381 73/380 (19%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
C2H2 Zn finger 352..373 CDD:275368 5/20 (25%)
C2H2 Zn finger 381..401 CDD:275368 3/19 (16%)
zf-H2C2_2 394..415 CDD:463886 2/20 (10%)
C2H2 Zn finger 409..429 CDD:275368 2/19 (11%)
zf-H2C2_2 422..446 CDD:463886 4/23 (17%)
C2H2 Zn finger 437..457 CDD:275368 3/19 (16%)
C2H2 Zn finger 467..485 CDD:275368 2/23 (9%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 6/19 (32%)
zf-H2C2_2 536..561 CDD:463886 8/82 (10%)
C2H2 Zn finger 552..573 CDD:275368 3/39 (8%)
zf-C2H2 587..609 CDD:395048 9/22 (41%)
C2H2 Zn finger 589..609 CDD:275368 8/20 (40%)
AT3G29340NP_189580.1 zf-C2H2_6 43..68 CDD:433576 9/27 (33%)
C2H2 Zn finger 45..65 CDD:275368 7/19 (37%)
zf-C2H2_6 98..122 CDD:433576 7/48 (15%)
C2H2 Zn finger 100..120 CDD:275368 5/44 (11%)
Blue background indicates that the domain is not in the aligned region.

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