DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and ZNF135

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_009065.1 Gene:ZNF135 / 7694 HGNCID:12919 Length:682 Species:Homo sapiens


Alignment Length:325 Identity:114/325 - (35%)
Similarity:164/325 - (50%) Gaps:13/325 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 QNSNASGHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKP 349
            |.::.....|.|..|..:.|.:...::|.|:|..|..::||.|.::||.::.|..|:..|.|.||
Human   313 QRTHTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKAFRQSIHLTQHLRIHTGEKP 377

  Fly   350 HKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTY 414
            ::|..|..||:.|..|.:|.|. ||.|||::|.||..|..::|.|.:|...||||:||:|..|..
Human   378 YQCGECGKAFSHSSSLTKHQRI-HTGEKPYECHECGKAFTQITPLIQHQRTHTGEKPYECGECGK 441

  Fly   415 ASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRKAD 479
            |......|..|..||||||.|.|:.|...|:.|:||..|:..|: .:|| ::|:.|.....:...
Human   442 AFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHSSSLSQHERTHT-GEKP-YECSQCGKAFRQSTH 504

  Fly   480 LRVHIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIH 544
            |..| :.:||.:.|..|..||:..........|.:.|.|||.|.|..|..|......|..|..||
Human   505 LTQH-QRIHTGEKPYECNDCGKAFSHSSSLTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIH 568

  Fly   545 LDEKPFHCDQCPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETH 609
            ..|||:.|:||.:||.|..||..|.. :|.        :||.:.|..|.:.|:|..:|.:|..||
Human   569 TGEKPYECNQCGRAFSQSSLLIEHQR-IHT--------KEKPYGCNECGKSFSHSSSLSQHERTH 624

  Fly   610  609
            Human   625  624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226
C2H2 Zn finger 296..316 CDD:275368 5/19 (26%)
COG5048 321..>621 CDD:227381 105/289 (36%)
zf-C2H2 322..344 CDD:278523 7/21 (33%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
zf-H2C2_2 337..361 CDD:290200 10/23 (43%)
C2H2 Zn finger 352..373 CDD:275368 8/20 (40%)
C2H2 Zn finger 381..401 CDD:275368 7/19 (37%)
zf-H2C2_2 394..415 CDD:290200 10/20 (50%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:290200 12/23 (52%)
C2H2 Zn finger 437..457 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..485 CDD:275368 4/17 (24%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 5/19 (26%)
zf-H2C2_2 536..561 CDD:290200 12/24 (50%)
C2H2 Zn finger 552..573 CDD:275368 9/20 (45%)
zf-C2H2 587..609 CDD:278523 6/21 (29%)
C2H2 Zn finger 589..609 CDD:275368 6/19 (32%)
ZNF135NP_009065.1 KRAB 26..85 CDD:214630
KRAB 26..65 CDD:279668
zf-C2H2 238..260 CDD:278523
C2H2 Zn finger 240..260 CDD:275368
COG5048 264..665 CDD:227381 114/325 (35%)
C2H2 Zn finger 268..288 CDD:275368
zf-H2C2_2 280..305 CDD:290200
C2H2 Zn finger 296..316 CDD:275368 1/2 (50%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
zf-H2C2_2 339..361 CDD:290200 8/21 (38%)
C2H2 Zn finger 352..372 CDD:275368 7/19 (37%)
zf-H2C2_2 364..389 CDD:290200 10/24 (42%)
C2H2 Zn finger 380..400 CDD:275368 8/20 (40%)
zf-H2C2_2 392..417 CDD:290200 12/25 (48%)
C2H2 Zn finger 408..428 CDD:275368 7/19 (37%)
zf-H2C2_2 421..445 CDD:290200 11/23 (48%)
C2H2 Zn finger 436..456 CDD:275368 5/19 (26%)
C2H2 Zn finger 464..484 CDD:275368 7/19 (37%)
zf-H2C2_2 476..501 CDD:290200 8/26 (31%)
C2H2 Zn finger 492..512 CDD:275368 4/20 (20%)
zf-H2C2_2 504..529 CDD:290200 8/25 (32%)
C2H2 Zn finger 520..540 CDD:275368 4/19 (21%)
zf-H2C2_2 532..557 CDD:290200 9/24 (38%)
C2H2 Zn finger 548..568 CDD:275368 5/19 (26%)
zf-H2C2_2 561..585 CDD:290200 12/23 (52%)
C2H2 Zn finger 576..596 CDD:275368 9/20 (45%)
C2H2 Zn finger 604..624 CDD:275368 6/19 (32%)
zf-H2C2_2 619..641 CDD:290200 3/6 (50%)
C2H2 Zn finger 632..652 CDD:275368
zf-H2C2_2 644..669 CDD:290200
C2H2 Zn finger 660..680 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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