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Protein Alignment CTCF and 2010315B03Rik

DIOPT Version :10

Sequence 1:	NP_648109.1	Gene:	CTCF / 38817	FlyBaseID:	FBgn0035769	Length:	818	Species:	Drosophila melanogaster
Sequence 2:	XP_011248168.1	Gene:	2010315B03Rik / 630836	MGIID:	1919321	Length:	479	Species:	Mus musculus

Alignment Length:	279	Identity:	52/279 - (18%)
Similarity:	96/279 - (34%)	Gaps:	97/279 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly    59 QSQTTEELEKYAVYKAEETTKG-------VNNCLKIAEDIR------------------SDGART 98
            :::.||:|||.  .|.|:..|.       :|:.|:.|:|.|                  :..|.|
Mouse   449 EARITEKLEKQ--QKIEQERKRRQKHQEYLNSILQHAKDFREYHRSVTGKLQKLTKAVATYHANT 511

  Fly    99 LEMLHQQGEQINRT------------HEMAVDMDKD------LSRGEKLLNNLGGMF-------- 137
            .....::.|:|.:.            :...:|..||      |.:.::.:.||..:.
Mouse   512 EREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQV 576

  Fly   138 ----SKPWKPKKTKNITG--PMITPD-KPSKKSENHKE--------EREKLGLGAKGRSSSQ--- 184
                .|..|.||.:|..|  |.|.|| :|..::....:        |..|:..|.....:.|
Mouse   577 AKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEA 641

  Fly   185 -----------PALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDH 238
                       |..|...:..::.|:|:.::.             ...|......::::.|..|.
Mouse   642 WLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQ-------------PQPAQPPTLPVEEKKKIPDP 693

  Fly   239 LGDDVDELNSR--VQGANQ 255
            ..|||.|:::|  ::.|.|
Mouse   694 DSDDVSEVDARHIIENAKQ 712

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.