DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and Zfp410

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_659082.1 Gene:Zfp410 / 52708 MGIID:1289280 Length:478 Species:Mus musculus


Alignment Length:372 Identity:83/372 - (22%)
Similarity:129/372 - (34%) Gaps:92/372 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 VSTATNKSINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALVVKVPAPRGR 188
            |:.|:..|..:.|.::...|.:||..|....:.                    :|.|.| .|.|.
Mouse    44 VTEASECSRLMLPDETPNHANSSKEVPSSAVLR--------------------SLQVNV-GPDGE 87

  Fly   189 PRKNPVIPKPEPMDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEAEVYEFEDN 253
            ..:...:.|.         .|.:..|:..|::.:|.........:...|.....:.||.:.|..:
Mouse    88 ETRAQTVQKS---------PEFLTTPESPSLLQDLQPSDSTSFILLNLTRAGLGSSAEHFVFVQD 143

  Fly   254 ATTEDENAD-------KKDVDFVLSNKEVK------------LKTASSTSQNSNASGHKYSCPHC 299
             .|||..||       ...:.:.|..:|:.            .|.|.:.|...|.          
Mouse   144 -ETEDSGADFLSAESTDSSIPWFLRVQELAHDSLIAATRAQLAKNAKTGSNGENV---------- 197

  Fly   300 PYTASKKFLITRHSRSHDVEP-----------SFKCSI--CERSFRSNVGLQNHINTHMGNKPHK 351
                        |..|.|.:|           ..||::  |:|:|......:.|:.||...:...
Mouse   198 ------------HLGSGDGQPKDSGPLPQAEKKLKCTVEGCDRTFVWPAHFKYHLKTHRNERSFI 250

  Fly   352 CKL--CESAFTTSGELVRHTRYKHTKEKPHKCTE--CTYASVELTKLRRHMTCHTGERPYQC--P 410
            |..  |..:|.....|..|.| .|..|||..|.|  |.........|:.|...||||:|:.|  .
Mouse   251 CPAEGCGKSFYVLQRLKVHMR-THNGEKPFMCHESGCGKQFTTAGNLKNHRRIHTGEKPFLCEAQ 314

  Fly   411 HCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIH 457
            .|..:..:...|::|:|:|:|||.:||.:|...|:||.|...|...|
Mouse   315 GCGRSFAEYSSLRKHLVVHSGEKPHQCQVCGKTFSQSGSRNVHMRKH 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 14/77 (18%)
C2H2 Zn finger 296..316 CDD:275368 1/19 (5%)
COG5048 321..>621 CDD:227381 46/145 (32%)
C2H2 Zn finger 324..344 CDD:275368 5/21 (24%)
C2H2 Zn finger 352..373 CDD:275368 6/22 (27%)
C2H2 Zn finger 381..401 CDD:275368 5/21 (24%)
zf-H2C2_2 394..415 CDD:463886 9/22 (41%)
C2H2 Zn finger 409..429 CDD:275368 5/21 (24%)
zf-H2C2_2 422..446 CDD:463886 11/23 (48%)
C2H2 Zn finger 437..457 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Zfp410NP_659082.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..113 6/37 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..214 7/48 (15%)
C2H2 Zn finger 221..243 CDD:275368 5/21 (24%)
COG5048 <228..368 CDD:227381 43/135 (32%)
C2H2 Zn finger 251..273 CDD:275368 6/22 (27%)
C2H2 Zn finger 281..303 CDD:275368 5/21 (24%)
C2H2 Zn finger 311..333 CDD:275368 5/21 (24%)
zf-H2C2_2 325..350 CDD:463886 11/24 (46%)
C2H2 Zn finger 341..361 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.