DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and wdn

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_476900.1 Gene:wdn / 43398 FlyBaseID:FBgn0005642 Length:869 Species:Drosophila melanogaster


Alignment Length:923 Identity:170/923 - (18%)
Similarity:293/923 - (31%) Gaps:328/923 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PRRTKKDEDPEDLQTFLNNFHKEIEGNSDEKVVNTILEAISAEAIDLDENGAEAGGSKPMEEAEA 66
            |.:...||....|.. :|||..              :.:|..|::|:|.:            |..
  Fly    32 PTKAAHDEILSSLLR-INNFDS--------------ISSIKDESLDIDLS------------ACV 69

  Fly    67 DLDHAEEAEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAAKPGKATRS---VVSTAT 128
            .:..|...........|.:.:.||         ..|...:..|.....:...|..|   |.||.|
  Fly    70 TISSASLVNGNSLSSTDFWRVLDE---------SAQNNTELNLSSDVCRDDLAATSSSTVPSTLT 125

  Fly   129 NKSINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALV-----VKVPAPRGR 188
            :.:    .:.|....|..:|.| |.|.:..|.:..::....:.:...|..:     :::|..:..
  Fly   126 SDN----HSSSEFSVTFLRPEP-PNAFTNSPFKKTSSSGTSTPVKLSPEQLHQQHQLQMPQSQLL 185

  Fly   189 PRKNPVIP----------KPEPMDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPN 243
            .|| |.:|          |.||.:.:...|::|.:                   ||...:.|.|.
  Fly   186 QRK-PKLPAATAVRLKVFKEEPPEEKHPPEQVVTK-------------------VEVCESELLPP 230

  Fly   244 EAEVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFL 308
            ...:::                          :.|:|.|.:..:       |.|  |..||:   
  Fly   231 SFTIFQ--------------------------QAKSAESVADAA-------SMP--PPAASE--- 257

  Fly   309 ITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKP-HKCKLCES-AFTTSGELVRHTRY 371
                ::..:|:|:                           | |||..|.. ...|..|:.:|...
  Fly   258 ----TKPLEVDPA---------------------------PLHKCLDCNGLLLETPDEVAKHEAA 291

  Fly   372 KHTKEKPHKCTECTYASVELTKLRRHMTCHTGERP----YQCPHCTYASQDMFKLKRHMVIHTGE 432
            .|.....::|:||......|..|::|:..|..|..    .:||.|....: :..:..|..||:..
  Fly   292 AHRLRLTYRCSECQREFELLAGLKKHLKTHRTEGRKDTWKKCPDCGKCLK-LGSMWMHRKIHSDN 355

  Fly   433 KKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRKADLRVHIKHMHTSDVPMTCR 497
            ||||||||..:|.|..:|..|..|||                               |:.|..|.
  Fly   356 KKYQCDICGQKFVQKINLTHHARIHS-------------------------------SEKPYECP 389

  Fly   498 RCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFRQR 562
            .|.::..:|...:.|.|.|...:.|.|:.|.....|:|.|..|.|:||:::||.|..|.::|...
  Fly   390 ECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACTVCDKSFISN 454

  Fly   563 QLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETHDDSANAREKRRRLKLGRN 627
            ..|::|.|:  :...:|       .||..|||:||:..|.::|            .|||.|:   
  Fly   455 SKLKQHSNI--HTGMRP-------FKCNYCPRDFTNFPNWLKH------------TRRRHKV--- 495

  Fly   628 VRLQKDGTVITLIKDQYVDMDRDQEENEEDDNPESY----------------------DLAEIEP 670
                                  |.:..|..:|..||                      ..:.:.|
  Fly   496 ----------------------DHKTGEHLENIPSYCSKKSTTNKAQKAAAAAAAAAAASSAVNP 538

  Fly   671 E----NSEAEDADDDVETIVSDPIR--------------------------QRIKPAPII----- 700
            .    :||.:...:...|....|.:                          |::.|.|:.     
  Fly   539 NELSASSELKAKANLTSTAAPAPAKQARKKKQPQQATLAALGITLPAGTALQQVHPVPLAQQHQQ 603

  Fly   701 ------------INKQARLAASEKQ---------PMIINQRLRSQRGTKTF----HIKEEPDNSD 740
                        ..||.:.....||         |.::.|....|...:..    .||:||    
  Fly   604 ELTTVLVPLAPPAPKQTKAKRERKQLAPKQLQQKPQLLQQGQPQQSSLEPIPAVPQIKKEP---- 664

  Fly   741 FTVEWQGDDGEVMVVELVNGDEEVLVKHEPSANSKISAKNCFGFEDDDDYEEYGDGENEV-DGAS 804
              |:.||...::..:.|.:.:|.::       ...:..:.|..::..:...|.|..:|.: |.|:
  Fly   665 --VQTQGPFLDLHGLSLTSAEELIM-------EQALEMEECGLYDAPNANTEMGTSDNAISDSAA 720

  Fly   805 QEFLQLMDMIEQD 817
            ....|:.:.:..:
  Fly   721 ALHFQIKNELPDE 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 22/103 (21%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
COG5048 321..>621 CDD:227381 75/305 (25%)
C2H2 Zn finger 324..344 CDD:275368 0/19 (0%)
C2H2 Zn finger 352..373 CDD:275368 5/21 (24%)
C2H2 Zn finger 381..401 CDD:275368 6/19 (32%)
zf-H2C2_2 394..415 CDD:463886 7/24 (29%)
C2H2 Zn finger 409..429 CDD:275368 4/19 (21%)
zf-H2C2_2 422..446 CDD:463886 12/23 (52%)
C2H2 Zn finger 437..457 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..485 CDD:275368 0/17 (0%)
C2H2 Zn finger 496..516 CDD:275370 5/19 (26%)
C2H2 Zn finger 524..544 CDD:275368 7/19 (37%)
zf-H2C2_2 536..561 CDD:463886 10/24 (42%)
C2H2 Zn finger 552..573 CDD:275368 6/20 (30%)
zf-C2H2 587..609 CDD:395048 9/21 (43%)
C2H2 Zn finger 589..609 CDD:275368 8/19 (42%)
wdnNP_476900.1 zf-C2HE <279..321 CDD:465082 10/41 (24%)
C2H2 Zn finger 301..321 CDD:275368 6/19 (32%)
C2H2 Zn finger 333..352 CDD:275368 4/19 (21%)
zf-C2H2 358..380 CDD:395048 10/21 (48%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
zf-H2C2_2 376..395 CDD:463886 8/49 (16%)
zf-C2H2 386..408 CDD:395048 5/21 (24%)
C2H2 Zn finger 388..436 CDD:275368 14/47 (30%)
zf-H2C2_2 400..425 CDD:463886 6/24 (25%)
C2H2 Zn finger 416..433 CDD:275368 5/16 (31%)
SUF4-like 440..>507 CDD:411020 25/112 (22%)
C2H2 Zn finger 444..465 CDD:411020 6/22 (27%)
C2H2 Zn finger 444..464 CDD:275368 6/21 (29%)
zf-H2C2_2 457..481 CDD:463886 10/32 (31%)
C2H2 Zn finger 472..493 CDD:411020 10/32 (31%)
C2H2 Zn finger 472..493 CDD:275368 10/32 (31%)

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