Protein Alignment CTCF and CG11902

DIOPT Version :10

• Sequence 1: NP_648109.1
• Gene: CTCF / 38817
• FlyBaseID: FBgn0035769
• Length: 818
• Species: Drosophila melanogaster
• Sequence 2: NP_651389.3
• Gene: CG11902 / 43070
• FlyBaseID: FBgn0028647
• Length: 1426
• Species: Drosophila melanogaster
• Alignment Length: 222
• Identity: 71/222 - (31%)
• Similarity: 102/222 - (45%)
• Gaps: 35/222 - (15%)

  Fly   256 TEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLITRHSRSH---D 317
            |||:..|:        :||       ::.......|..:.|..|....::|..:|.|.:..   |
  Fly  1199 TEDQELDE--------SKE-------ASGDEPKTEGQVFQCGLCTRKYNRKDRLTAHLKKFHGPD 1248

  Fly   318 VEPS----------------FKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELV 366
            .:||                |.|:.|.::..|:..|..|:..|.|.||.||:.|..||..|.:|.
  Fly  1249 CKPSTAKTPNRPISPKEPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCEYCTMAFPRSSDLQ 1313

  Fly   367 RHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMVIHTG 431
            .|.| .||.|:||.||.|........||::||..|:|||||:|.:|..:......|..|:..|||
  Fly  1314 CHRR-THTGERPHVCTVCQKGFARSYKLQQHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTG 1377

  Fly   432 EKKYQCDICKSRFTQSNSLKAHKLIHS 458
            |:.|||.:|..||.|..:||.|::..|
  Fly  1378 ERPYQCGVCGERFIQGTALKNHRMQQS 1404

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CTCF	NP_648109.1	FAP	116..>202	CDD:429334
		C2H2 Zn finger	296..316	CDD:275368	5/19 (26%)
		COG5048	321..>621	CDD:227381	57/154 (37%)
		C2H2 Zn finger	324..344	CDD:275368	5/19 (26%)
		C2H2 Zn finger	352..373	CDD:275368	8/20 (40%)
		C2H2 Zn finger	381..401	CDD:275368	7/19 (37%)
		zf-H2C2_2	394..415	CDD:463886	11/20 (55%)
		C2H2 Zn finger	409..429	CDD:275368	4/19 (21%)
		zf-H2C2_2	422..446	CDD:463886	12/23 (52%)
		C2H2 Zn finger	437..457	CDD:275368	8/19 (42%)
		C2H2 Zn finger	467..485	CDD:275368
		C2H2 Zn finger	496..516	CDD:275370
		C2H2 Zn finger	524..544	CDD:275368
		zf-H2C2_2	536..561	CDD:463886
		C2H2 Zn finger	552..573	CDD:275368
		zf-C2H2	587..609	CDD:395048
		C2H2 Zn finger	589..609	CDD:275368
CG11902	NP_651389.3	zf-AD	6..83	CDD:462262
		C2H2 Zn finger	208..228	CDD:275370
		C2H2 Zn finger	236..256	CDD:275370
		C2H2 Zn finger	384..405	CDD:275368
		C2H2 Zn finger	417..437	CDD:275368
		C2H2 Zn finger	447..463	CDD:275368
		C2H2 Zn finger	578..599	CDD:275368
		C2H2 Zn finger	610..629	CDD:275368
		C2H2 Zn finger	640..660	CDD:275368
		SUF4-like	673..>726	CDD:411020
		C2H2 Zn finger	676..703	CDD:411020
		C2H2 Zn finger	676..696	CDD:275368
		C2H2 Zn finger	706..726	CDD:411020
		C2H2 Zn finger	706..726	CDD:275368
		C2H2 Zn finger	762..782	CDD:275368
		C2H2 Zn finger	866..887	CDD:275368
		C2H2 Zn finger	896..918	CDD:275368
		C2H2 Zn finger	926..947	CDD:275368
		C2H2 Zn finger	967..987	CDD:275368
		C2H2 Zn finger	996..1016	CDD:275368
		C2H2 Zn finger	1044..1063	CDD:275368
		C2H2 Zn finger	1224..1244	CDD:275368	5/19 (26%)
		C2H2 Zn finger	1271..1291	CDD:275368	5/19 (26%)
		zf-H2C2_2	1283..1306	CDD:463886	9/22 (41%)
		C2H2 Zn finger	1299..1319	CDD:275368	8/20 (40%)
		C2H2 Zn finger	1327..1347	CDD:275368	7/19 (37%)
		zf-H2C2_2	1340..1364	CDD:463886	11/23 (48%)
		SFP1	<1349..1405	CDD:227516	24/56 (43%)
		C2H2 Zn finger	1355..1375	CDD:275368	4/19 (21%)
		C2H2 Zn finger	1383..1401	CDD:275368	8/17 (47%)