DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Zaf1

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_731602.1 Gene:Zaf1 / 41394 FlyBaseID:FBgn0037921 Length:375 Species:Drosophila melanogaster


Alignment Length:302 Identity:77/302 - (25%)
Similarity:131/302 - (43%) Gaps:63/302 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 EPMDLERELEE--LVDEPDISSMVTELS--DYTVDEAAVEAATATLTPNEAEV---------YEF 250
            |.::.:.:||:  ...:.:||..:.|.:  ::...|.|:|      |..:.|:         :.|
  Fly    92 ETLEDKDQLEQKKRARKQNISGRLIEENPINFKTQENALE------TTKDDEILPINKFSSDFVF 150

  Fly   251 EDNATTEDENADKKDV---DFVLS----NKEVKLKTASST-SQNSNASGHKYSCPHCPYTASKKF 307
            :.|...|:|    ||:   |:.:|    ::|:..:..|.| ||.|:|:.....      ..|:.:
  Fly   151 DLNVNAENE----KDIHQEDYTISDMDLDREISDQNYSETYSQESSAATDSIQ------ETSEDY 205

  Fly   308 LITRHSRSHDVEPS---------------FKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCES 357
                    |::|||               ::|.||..::|....|..|...|...|.|:|::|:.
  Fly   206 --------HNLEPSADYVIDLGVACEPDKYRCKICSNTYRCLSQLNAHSQVHRKEKDHQCEVCQK 262

  Fly   358 AFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKL 422
            .|..:..|..|.| .||.|||::|..|:....:.:..|:|...||.||||.|..|..........
  Fly   263 TFRAACNLKTHMR-THTGEKPYQCCYCSRRFADNSTHRKHERLHTNERPYACNICGKTFSLSSSR 326

  Fly   423 KRHMVIHTGEKKYQCDICKSRFTQSNSLKAHK--LIHSVVDK 462
            ..|..:|:.||.::|.:||..|...:.|.||:  |.|.::.|
  Fly   327 NAHYYLHSSEKSHKCLMCKKEFRLKHQLTAHEKSLAHRLIAK 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 1/2 (50%)
C2H2 Zn finger 296..316 CDD:275368 1/19 (5%)
COG5048 321..>621 CDD:227381 47/159 (30%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..373 CDD:275368 6/20 (30%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
zf-H2C2_2 394..415 CDD:463886 10/20 (50%)
C2H2 Zn finger 409..429 CDD:275368 3/19 (16%)
zf-H2C2_2 422..446 CDD:463886 8/23 (35%)
C2H2 Zn finger 437..457 CDD:275368 8/21 (38%)
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Zaf1NP_731602.1 zf-AD 9..79 CDD:214871
SFP1 <161..320 CDD:227516 47/173 (27%)
C2H2 Zn finger 229..249 CDD:275368 6/19 (32%)
C2H2 Zn finger 257..277 CDD:275368 6/20 (30%)
zf-H2C2_2 269..293 CDD:463886 10/24 (42%)
C2H2 Zn finger 285..305 CDD:275368 4/19 (21%)
C2H2 Zn finger 313..333 CDD:275368 3/19 (16%)
C2H2 Zn finger 341..359 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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