DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and CG8319

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_649920.2 Gene:CG8319 / 41165 FlyBaseID:FBgn0037722 Length:383 Species:Drosophila melanogaster


Alignment Length:403 Identity:109/403 - (27%)
Similarity:164/403 - (40%) Gaps:82/403 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 ELEELVDEPDISSMVTELSDYTV--DEAAVEAATATLTPNEAEVYEF------------------ 250
            ::||.||...::.||...:|..:  |:|..:....:...:....|.|                  
  Fly    22 QVEEYVDGAKLAEMVKTCADVQLDPDDAMPQKMCISCVHDARTAYGFKRRCEENYKKFYLAILNG 86

  Fly   251 ---EDNATTED----ENADKKDVDFVLS-NKEVKL--KTASSTSQNSNASGHKYSCPHCPYTASK 305
               :|....||    ||.||.:::.... |||:|.  :|||.|:::|             .|.|:
  Fly    87 QVIKDEPNEEDFLFIENPDKGNLEAKKKLNKEIKKTHQTASRTTKSS-------------ITTSR 138

  Fly   306 KFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHTR 370
            .....|..::.    :|||.:|.:.|:..:.|.:|:..|  :..|.|:.||..|....:|..|..
  Fly   139 AGRQLRSIKNQ----TFKCELCIKQFKRQINLLDHMKVH--SNSHVCQNCEERFLFKADLDNHQC 197

  Fly   371 YKHTKEKPHKCTECTYASVELTKLRRHMTCHTGER-PYQCPHCTYASQDMFKLKRHMVIHTGEKK 434
            |:::.... :|.||.........|..|......|| |:|||||..|                   
  Fly   198 YRNSNSTV-ECPECLKVFSSTQSLDSHKCKDMQERSPFQCPHCQQA------------------- 242

  Fly   435 YQCDICKSRFTQSNSLKAHKLIH--SVVDKPVFQCNYCPTTCGRKADLRVHIKHMHTSDVPMTCR 497
                     ||:..:||||.|||  |.......:|:||.|....|:.|:||| |.|..:.|..|.
  Fly   243 ---------FTREQNLKAHLLIHAESKQGNGPHKCSYCQTGFFNKSALKVHI-HAHMGERPHACP 297

  Fly   498 RCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFRQR 562
            .|......:...|:|::.|.|||.|.|..|........:||.|...|.||:|:.|..|.|.||::
  Fly   298 FCVSNFRSKQALKVHIRIHTGEKPYQCPHCPKTFSDNNNLAKHRRRHSDERPYKCSICLQDFREK 362

  Fly   563 QLLRRHMNLVHNE 575
            ..|:||....|.:
  Fly   363 HHLKRHFLGKHRD 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 79/258 (31%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 5/19 (26%)
zf-H2C2_2 394..415 CDD:463886 10/21 (48%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:463886 1/23 (4%)
C2H2 Zn finger 437..457 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..485 CDD:275368 8/17 (47%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 5/19 (26%)
zf-H2C2_2 536..561 CDD:463886 11/24 (46%)
C2H2 Zn finger 552..573 CDD:275368 8/20 (40%)
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
CG8319NP_649920.2 zf-AD 4..79 CDD:462262 11/56 (20%)
COG5048 <153..368 CDD:227381 74/246 (30%)
C2H2 Zn finger 153..173 CDD:275368 5/19 (26%)
C2H2 Zn finger 179..196 CDD:275368 5/16 (31%)
C2H2 Zn finger 207..227 CDD:275370 5/19 (26%)
C2H2 Zn finger 236..256 CDD:275368 12/47 (26%)
C2H2 Zn finger 268..288 CDD:275368 10/20 (50%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..368 CDD:275368 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.

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