DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and zgc:66443

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_998700.1 Gene:zgc:66443 / 406856 ZFINID:ZDB-GENE-040426-2945 Length:327 Species:Danio rerio


Alignment Length:286 Identity:68/286 - (23%)
Similarity:109/286 - (38%) Gaps:64/286 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 GRPRKNPVIPKPEPMDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEAEVYEFE 251
            |:.:.|.|.|..:|..:.|                         |..|:|.......|||| :.:
Zfish    64 GQVQPNVVQPTEQPKRVFR-------------------------APAESANQVHQQKEAEV-QSQ 102

  Fly   252 DNAT--------------TEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYT 302
            |:|:              ||.|:.:.||.......:.:....:|||::|:..:....:.|.....
Zfish   103 DSASDLKPRILDVTSICKTEAEDREVKDAAPGAEQRLLPQTDSSSTNENTGVALRIKTEPEDTII 167

  Fly   303 ASKKFLIT--RHSRSH-DVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGE 364
            .....:.|  .|:.:| |.||:.:......:.|               :|.: |.|  ..|..|.
Zfish   168 TITSSVTTAPAHAGTHQDSEPAQQLRPANETLR---------------RPQR-KEC--LRTRYGR 214

  Fly   365 LVRHTRYKH-TKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMVI 428
            ..|.|...| ..|.|:||.:|.....:|.||:.|...|  ||.:.|..|.........|:.||..
Zfish   215 ARRATARDHDLDEGPYKCNKCGRHLKDLAKLQLHKKLH--ERSFICHWCGRNFSKFDYLRMHMRT 277

  Fly   429 HTGEKKYQCDICKSRFTQSNSLKAHK 454
            ||||:.|:|:.|...|:||.:::.|:
Zfish   278 HTGERPYRCNWCSKTFSQSGNMRRHE 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 5/14 (36%)
C2H2 Zn finger 296..316 CDD:275368 3/21 (14%)
COG5048 321..>621 CDD:227381 37/135 (27%)
C2H2 Zn finger 324..344 CDD:275368 1/19 (5%)
C2H2 Zn finger 352..373 CDD:275368 6/20 (30%)
C2H2 Zn finger 381..401 CDD:275368 6/19 (32%)
zf-H2C2_2 394..415 CDD:463886 7/20 (35%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:463886 11/23 (48%)
C2H2 Zn finger 437..457 CDD:275368 6/18 (33%)
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
zgc:66443NP_998700.1 COG5048 <229..315 CDD:227381 27/77 (35%)
C2H2 Zn finger 232..252 CDD:275368 6/19 (32%)
C2H2 Zn finger 258..278 CDD:275368 5/19 (26%)
zf-H2C2_2 270..295 CDD:463886 11/24 (46%)
C2H2 Zn finger 286..305 CDD:275368 6/18 (33%)
Blue background indicates that the domain is not in the aligned region.

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