DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and CG10147

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_648046.1 Gene:CG10147 / 38733 FlyBaseID:FBgn0035702 Length:448 Species:Drosophila melanogaster


Alignment Length:393 Identity:104/393 - (26%)
Similarity:145/393 - (36%) Gaps:92/393 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 RKNPVIPKPEPMDLERELEELVDEPDISSMV---TELSDYTVDEAAVEAATA----TLTPNEAEV 247
            |:.||....|..:.|.|||||:.||  ..|:   |.||.......|.:|...    |.|.|..:.
  Fly    91 RRKPVYEVDEDEEEELELEELLLEP--PEMIICDTNLSAQNTPIVAEQAPPTLVFHTFTENVQQP 153

  Fly   248 YEFEDNATTE------------DENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHK-YSC--P 297
            .|.|..|..|            ||..::|.:  :|..||              ..||. |.|  |
  Fly   154 PETEKKALEEPPLTTYKCDLCADEFREEKRL--ILHKKE--------------HQGHMLYHCTEP 202

  Fly   298 HCPYTASKKFLITRHSRSHDVEPS-----FKCSI--CERSFRSNVGLQNH-INTHMGNKP---HK 351
            .|. .|..:|   .:.|.|::|.|     |.|..  |.|.:|....|:.| ...|...||   |.
  Fly   203 GCE-EAFNRF---ENLRQHELEHSEVGMRFVCEEEGCNRMYRHKASLKYHQSKAHDIGKPLKTHM 263

  Fly   352 CKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGER---PYQC--PH 411
            |:.|...|.|...|.:| |:.|                             |::   ||.|  |.
  Fly   264 CEFCGRVFKTGSALSQH-RFTH-----------------------------GDQLVLPYACELPE 298

  Fly   412 CTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGR 476
            |:.......|||.||:.|.|.|.:.|..|..:.|..|.|:.|...|::  :..:.|..||..|..
  Fly   299 CSMRFYSTEKLKIHMMRHQGIKNFSCPYCGLKKTTKNELRLHINYHTL--ERTWSCKDCPKVCNS 361

  Fly   477 KADLRVHIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHM 541
            ...|:.||:.:|.......|..|.::.......|.|..:|.|||.:.|.:|....:....|.:|.
  Fly   362 STSLKKHIRAIHEKARDYACSYCEKKFATTDTRKYHEMTHTGEKNFECHVCGKKFIQPSALRTHR 426

  Fly   542 LIH 544
            .:|
  Fly   427 KVH 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 4/11 (36%)
C2H2 Zn finger 296..316 CDD:275368 6/21 (29%)
COG5048 321..>621 CDD:227381 62/240 (26%)
C2H2 Zn finger 324..344 CDD:275368 6/22 (27%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 0/19 (0%)
zf-H2C2_2 394..415 CDD:463886 6/25 (24%)
C2H2 Zn finger 409..429 CDD:275368 8/21 (38%)
zf-H2C2_2 422..446 CDD:463886 9/23 (39%)
C2H2 Zn finger 437..457 CDD:275368 6/19 (32%)
C2H2 Zn finger 467..485 CDD:275368 6/17 (35%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:463886 3/9 (33%)
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
CG10147NP_648046.1 zf-AD 7..80 CDD:214871
C2H2 Zn finger 171..191 CDD:275368 6/35 (17%)
C2H2 Zn finger 199..221 CDD:275368 7/25 (28%)
SFP1 <228..284 CDD:227516 18/56 (32%)
C2H2 Zn finger 230..253 CDD:275368 6/22 (27%)
C2H2 Zn finger 264..284 CDD:275368 7/20 (35%)
C2H2 Zn finger 294..316 CDD:275368 8/21 (38%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
C2H2 Zn finger 409..429 CDD:275368 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.

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