DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Zfp229

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001158148.1 Gene:Zfp229 / 381067 MGIID:2679295 Length:705 Species:Mus musculus


Alignment Length:331 Identity:116/331 - (35%)
Similarity:162/331 - (48%) Gaps:15/331 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 ASSTSQNSNA-SGHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINT 343
            :||..::.|. :|..|.|..|....:....:..|.:.|..|..|||..|.:||.....|:.|..|
Mouse   380 SSSLREHQNMHAGKLYKCQECDKCFTWCSSLRAHEKIHTGEKPFKCKECGKSFCMLSQLRKHART 444

  Fly   344 HMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQ 408
            |.|.||:|||.||.:||....|..|.:. |..|||:||.||.....:|:.|:.|...||||:|||
Mouse   445 HTGEKPYKCKECEKSFTQCSTLRIHQKI-HAGEKPYKCKECGKCFYKLSYLKVHYRTHTGEKPYQ 508

  Fly   409 CPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTT 473
            |..|......:..||.|..||||||.|:|..|...||..::.:.|:..|:.  || ::|..|..:
Mouse   509 CKECGKGFSQLSCLKSHERIHTGEKPYKCSECDKSFTHCSTCRRHQSTHAA--KP-YKCEECDKS 570

  Fly   474 CGRKADLRVHIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLA 538
            ..:::.||.|.| :|..:.|..|:.||:........|:|.:.|.|||.|.|..|..:......|.
Mouse   571 FAKQSSLRTHQK-VHAGEKPHACKECGKAFYQLSHLKVHYRIHTGEKPYKCDECEKSFTKCSSLR 634

  Fly   539 SHMLIHLDEKPFHCDQCPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLM 603
            :|..||..|||..|::|.:||....    |:| :|...:    ..||.:||..|.:.||...||.
Mouse   635 THQKIHAGEKPHACEKCGKAFYHLS----HLN-IHYRTH----TGEKPYKCSDCDKSFTTLANLR 690

  Fly   604 RHMETH 609
            ||...|
Mouse   691 RHHRLH 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 106/289 (37%)
zf-C2H2 322..344 CDD:278523 8/21 (38%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
zf-H2C2_2 337..361 CDD:290200 13/23 (57%)
C2H2 Zn finger 352..373 CDD:275368 8/20 (40%)
C2H2 Zn finger 381..401 CDD:275368 6/19 (32%)
zf-H2C2_2 394..415 CDD:290200 11/20 (55%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:290200 13/23 (57%)
C2H2 Zn finger 437..457 CDD:275368 5/19 (26%)
C2H2 Zn finger 467..485 CDD:275368 5/17 (29%)
C2H2 Zn finger 496..516 CDD:275370 5/19 (26%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:290200 11/24 (46%)
C2H2 Zn finger 552..573 CDD:275368 6/20 (30%)
zf-C2H2 587..609 CDD:278523 9/21 (43%)
C2H2 Zn finger 589..609 CDD:275368 8/19 (42%)
Zfp229NP_001158148.1 KRAB 13..73 CDD:214630
C2H2 Zn finger 205..223 CDD:275368
COG5048 <227..412 CDD:227381 7/31 (23%)
C2H2 Zn finger 231..251 CDD:275368
C2H2 Zn finger 259..279 CDD:275368
C2H2 Zn finger 287..307 CDD:275368
C2H2 Zn finger 314..334 CDD:275368
COG5048 338..704 CDD:227381 116/331 (35%)
C2H2 Zn finger 342..362 CDD:275368
C2H2 Zn finger 370..390 CDD:275368 3/9 (33%)
C2H2 Zn finger 397..417 CDD:275368 3/19 (16%)
C2H2 Zn finger 425..445 CDD:275368 6/19 (32%)
C2H2 Zn finger 453..473 CDD:275368 8/20 (40%)
C2H2 Zn finger 481..501 CDD:275368 6/19 (32%)
C2H2 Zn finger 509..529 CDD:275368 5/19 (26%)
C2H2 Zn finger 537..557 CDD:275368 5/19 (26%)
C2H2 Zn finger 564..584 CDD:275368 6/20 (30%)
C2H2 Zn finger 592..612 CDD:275368 5/19 (26%)
C2H2 Zn finger 620..640 CDD:275368 4/19 (21%)
C2H2 Zn finger 648..668 CDD:275368 7/24 (29%)
C2H2 Zn finger 676..696 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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