DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and Zbtb48

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:XP_038966377.1 Gene:Zbtb48 / 362668 RGDID:1311581 Length:739 Species:Rattus norvegicus


Alignment Length:813 Identity:156/813 - (19%)
Similarity:269/813 - (33%) Gaps:269/813 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LQTFLNNFHKEIEGNSDEKVVNTILEAISAEAIDL-----DENGAEAGGSKPMEEAEADL-DHAE 72
            |..|....|..:...:.::|:....|....||::|     .:..|....|.|.:.:..|: .|.:
  Rat    76 LLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSAGQAQSGPGQVSSQDVKSHLK 140

  Fly    73 EAEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAA--KPGKATRSVVSTATNKSINLR 135
            |..:.:|:                       |:.:.|..|:.  :|....:..:||         
  Rat   141 EPTDLDEE-----------------------EVFRTLSLASVDQEPRDGEQPQLST--------- 173

  Fly   136 PAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEP 200
            ||:|:|                   .....|.||...|.|||                       
  Rat   174 PAQSSP-------------------AFLCGKLKQVLKPSPPA----------------------- 196

  Fly   201 MDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATL--TPNEAE-VYEFEDNATTEDENAD 262
               ::|.|:..:.|                ...||..|.|  ..||.| |.:.||:...:.:.|.
  Rat   197 ---DKESEDSKEPP----------------RPFEAEGAPLQGESNEWEVVVQVEDDRDGDGDYAS 242

  Fly   263 KKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSIC 327
            :.:.  ||:.::.|:......::.:..:|...:.|    |..:|      ..:..||    |..|
  Rat   243 EPET--VLTRRKSKVIRKPCAAEPALGAGSLTAEP----TEGRK------GAAVPVE----CPTC 291

  Fly   328 ERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRH--TRYKHTKEKPHKCTECTYASVE 390
            .:.|.|...|:.|...|.|.||.:|..|...:.....|:.|  ....:..|:...|:.|......
  Rat   292 HKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRR 356

  Fly   391 LTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMV-IHTGEKKYQCDI--------------- 439
            ..:||.||..||||.||:|..|:........|:.||: :|...|.:....               
  Rat   357 RMELRVHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHGAPKPHAVSAKQGWGSCGPWTAQPC 421

  Fly   440 -------------CKSRFTQS-----NSLKAHKLIHSVVDKPVF---------------QCNYCP 471
                         |.:....|     .|....:|: |:|:|...               :|...|
  Rat   422 PHLDSLPLPVSPSCSAPLVPSASCLGRSYSCTRLL-SIVEKSSLCVKNVGTGPQAAMGCRCTSRP 485

  Fly   472 TTCGRKADLRVHIKHMHTSDVP---MTCRRCGQQLPD-------------RYQYKL--------- 511
            :| |.|..:.|....||:...|   .||....::.|.             |....|         
  Rat   486 ST-GMKGRMSVSSAAMHSPRRPTSTCTCAHTQERSPSSATSVGRPSAPKVRQARPLLASGLRQVL 549

  Fly   512 ------------HVKSHEGEKCYSCKLCSYASVTQ----RHLASHMLIHLDEKPFHCDQCPQAFR 560
                        |.::|.||:.:||:.|......:    ||:||.   |.:.:|..|..|.:.|:
  Rat   550 SSTLSPTASLDKHNRTHTGERPFSCEFCEQRFTEKGPLLRHVASR---HQEGRPHFCQICGKTFK 611

  Fly   561 QRQLLRRHMNLVHNEEYQPPEPREKLHK------CPSCPREFTHKGNLMRHMETHDDSANAREKR 619
            ..:.||.|:               :.||      |..|..:||.:.:|.||||.||...|...::
  Rat   612 AVEQLRVHV---------------RRHKGVRKFECTECGYKFTRQAHLRRHMEIHDRVENYNPRQ 661

  Fly   620 RRLKLGRNVRLQKDGTVITLIKDQYVDMDRDQEENEEDDNPESYDLAEIEPENSEAEDADDDVET 684
            |:|   ||:.:..:..|:..::                           .|.:.|...|:..||:
  Rat   662 RKL---RNLIIDDEKMVVVALQ---------------------------PPADLEVGSAEVIVES 696

  Fly   685 IVSDPIRQRIKPAPIIINKQARLAASEKQPMII 717
            :....:..:: |:..:.::::..::...:|.:|
  Rat   697 LTQGGLASQL-PSQRLCSEESFASSGVLEPSLI 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 14/85 (16%)
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 88/397 (22%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..373 CDD:275368 4/22 (18%)
C2H2 Zn finger 381..401 CDD:275368 6/19 (32%)
zf-H2C2_2 394..415 CDD:463886 12/20 (60%)
C2H2 Zn finger 409..429 CDD:275368 5/20 (25%)
zf-H2C2_2 422..446 CDD:463886 6/52 (12%)
C2H2 Zn finger 437..457 CDD:275368 4/52 (8%)
C2H2 Zn finger 467..485 CDD:275368 6/17 (35%)
C2H2 Zn finger 496..516 CDD:275370 5/53 (9%)
C2H2 Zn finger 524..544 CDD:275368 6/23 (26%)
zf-H2C2_2 536..561 CDD:463886 8/24 (33%)
C2H2 Zn finger 552..573 CDD:275368 6/20 (30%)
zf-C2H2 587..609 CDD:395048 11/27 (41%)
C2H2 Zn finger 589..609 CDD:275368 9/19 (47%)
Zbtb48XP_038966377.1 BTB_POZ_ZBTB48_TZAP_KR3 8..115 CDD:349541 8/38 (21%)
C2H2 Zn finger 288..308 CDD:275368 6/19 (32%)
zf-H2C2_2 300..323 CDD:463886 8/22 (36%)
C2H2 Zn finger 316..367 CDD:275368 11/50 (22%)
zf-C2H2 345..367 CDD:395048 6/21 (29%)
zf-H2C2_2 359..382 CDD:463886 12/22 (55%)
C2H2 Zn finger 375..396 CDD:275368 5/20 (25%)
C2H2 Zn finger 574..595 CDD:275368 6/23 (26%)
C2H2 Zn finger 603..623 CDD:275368 6/34 (18%)
zf-H2C2_2 616..640 CDD:463886 8/38 (21%)
zf-C2H2 629..651 CDD:395048 9/21 (43%)
C2H2 Zn finger 631..651 CDD:275368 9/19 (47%)

Return to query results.
Submit another query.