DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Zbtb40

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001178800.1 Gene:Zbtb40 / 362635 RGDID:1309866 Length:1255 Species:Rattus norvegicus


Alignment Length:612 Identity:142/612 - (23%)
Similarity:214/612 - (34%) Gaps:173/612 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 NGAEAGGSKPMEEAEADLDHAEEAEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAAK 115
            :|...|.....|||      ||.|.|:....|.|    ::|.   :..|::|:      |..:|.
  Rat   698 DGLHPGAKDKTEEA------AEAAREDGRAMEQK----EQGP---EPVPERQE------KDTSAS 743

  Fly   116 PGKATRSVVSTATNKSINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALVV 180
            |..|.:|.|..|.:||.:..                 ..:.|...|...||:||:          
  Rat   744 PDAAKKSFVCKACDKSFHFY-----------------CRLKVHMKRCRVAKSKQA---------- 781

  Fly   181 KVPAPRGRPRKNPVIPKPEPMDLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEA 245
                 :|:       ...:..|.|:||..  .:|                   ||.:|...|   
  Rat   782 -----QGK-------GDSDTRDSEKELGR--QQP-------------------EARSAGAEP--- 810

  Fly   246 EVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLIT 310
                          :|.||      ..|.:.:.......:.::|||.:|            ..:|
  Rat   811 --------------DAPKK------KKKRLPVTCDLCGREFAHASGMQY------------HKLT 843

  Fly   311 RHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTK 375
            .|   .|.:| |.|..|...|.:|..|:||:..|.|::|..||.|...||.:..|..||:.||::
  Rat   844 EH---FDEKP-FSCEECGAKFAANSTLKNHLRLHTGDRPFMCKHCLMTFTQASALAYHTKKKHSE 904

  Fly   376 EKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHM-VIHTG-EKKYQCD 438
            .|.:.|..|.....:..:|.||:..|||::||.|..|....:....|..|: ..||. |..|.|.
  Rat   905 GKMYACQYCDAVFAQSIELSRHVRTHTGDKPYVCRDCGKGFRQANGLSIHLHTFHTDIEDPYDCK 969

  Fly   439 ICKSRFTQSNSLKAH-KLIHSVVDKPVFQCNYC---------------------PTTCG------ 475
            .|:..|   ::|:.| |.||.|..|....|..|                     |.:||      
  Rat   970 KCRMSF---STLQDHRKHIHDVHSKEYHPCPTCGKIFSAPSMLERHMVTHVGGKPFSCGICNKAY 1031

  Fly   476 -RKADLRVHIKHMHTSDV------------PMTCRRCGQQLPDRYQYKLHVKS-HEGEKCYSCKL 526
             :.:.|..| ...|..||            .:.|..|.:...:..::|.|:|: |...|.:.|..
  Rat  1032 QQLSGLWYH-NRTHHPDVFAAQNHRSPKFSSLQCSSCDKTFSNTIEHKKHIKTEHADLKFHECGQ 1095

  Fly   527 CSYASVTQRHLASHMLI-HLDEKPFHCDQCPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCP 590
            |.....|...|..|:.. |...:||.|..|...||....|:.|:...|.::.:...|      |.
  Rat  1096 CKELFPTPALLQVHVKCQHSGSQPFRCLYCAATFRFPGALQHHVTTEHFKQSESTFP------CE 1154

  Fly   591 SCPREFTHKGNLMRHMETHDDSANARE 617
            .|...||.:..|..|:|:........|
  Rat  1155 LCGELFTSQAQLDGHLESEHPKVTGTE 1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226 16/89 (18%)
C2H2 Zn finger 296..316 CDD:275368 2/19 (11%)
COG5048 321..>621 CDD:227381 91/342 (27%)
zf-C2H2 322..344 CDD:278523 8/21 (38%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
zf-H2C2_2 337..361 CDD:290200 10/23 (43%)
C2H2 Zn finger 352..373 CDD:275368 8/20 (40%)
C2H2 Zn finger 381..401 CDD:275368 5/19 (26%)
zf-H2C2_2 394..415 CDD:290200 10/20 (50%)
C2H2 Zn finger 409..429 CDD:275368 4/20 (20%)
zf-H2C2_2 422..446 CDD:290200 9/25 (36%)
C2H2 Zn finger 437..457 CDD:275368 6/20 (30%)
C2H2 Zn finger 467..485 CDD:275368 7/45 (16%)
C2H2 Zn finger 496..516 CDD:275370 5/20 (25%)
C2H2 Zn finger 524..544 CDD:275368 5/20 (25%)
zf-H2C2_2 536..561 CDD:290200 8/25 (32%)
C2H2 Zn finger 552..573 CDD:275368 6/20 (30%)
zf-C2H2 587..609 CDD:278523 7/21 (33%)
C2H2 Zn finger 589..609 CDD:275368 7/19 (37%)
Zbtb40NP_001178800.1 BTB_POZ_ZBTB40 1..116 CDD:349534
C2H2 Zn finger 824..845 CDD:275368 5/32 (16%)
C2H2 Zn finger 853..873 CDD:275368 7/19 (37%)
COG5048 <869..1122 CDD:227381 68/256 (27%)
C2H2 Zn finger 881..930 CDD:275368 16/48 (33%)
C2H2 Zn finger 938..957 CDD:275368 4/18 (22%)
C2H2 Zn finger 968..986 CDD:275370 6/20 (30%)
C2H2 Zn finger 1024..1044 CDD:275368 4/20 (20%)
C2H2 Zn finger 1064..1083 CDD:275368 4/18 (22%)
C2H2 Zn finger 1093..1114 CDD:275368 5/20 (25%)
zf-Di19 1120..1174 CDD:398954 16/59 (27%)
C2H2 Zn finger 1122..1141 CDD:275368 6/18 (33%)
C2H2 Zn finger 1153..1170 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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