DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and CG17568

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_609951.2 Gene:CG17568 / 35198 FlyBaseID:FBgn0032763 Length:513 Species:Drosophila melanogaster


Alignment Length:554 Identity:118/554 - (21%)
Similarity:204/554 - (36%) Gaps:125/554 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RRTKKDEDPEDLQTFLNNFHKEIEGNSDEKVVNTI---------LE------------AISAEAI 46
            |...||:...:::..:|   :..:||.|..::..|         ||            .:.:|.|
  Fly    12 RLCAKDDAHGNVKVQMN---ENSQGNWDNVLIMAIRKYFEVQMQLEDELSSVLCTECYTLISELI 73

  Fly    47 DLDENGAEAGGSKPMEEAEADLDHAEEAEEEEED----DEDKYFIDDEGNCYIKTTPKKQKELQK 107
            |..|:..:      :::....|...|...::|.|    .:.....||:....||..|..:.|   
  Fly    74 DFAEHVTK------VQDIFEVLRRTETDGDQEMDVAALRQQFGLCDDDWTHIIKPIPALEME--- 129

  Fly   108 KLKQAAAKPGKATRSVVSTATNKSINLRPA---KSTPKATTSKPPPEPKAISVRPARAAAAKAKQ 169
                                 :.::..:||   |..|.|.||....|   ||.|.......:.|:
  Fly   130 ---------------------SDNVYQKPAELLKDFPLAETSSQEME---ISKRTTTTHLIQTKK 170

  Fly   170 SAMPPPPALVVKVPAPRGRPRKNPVIPKPE-----PMDLERELEELVDEPDISSMVTELSDYTVD 229
            :.                    ...|||.|     |:.||:...:|    |:..::.||....:.
  Fly   171 NV--------------------EMEIPKQEFIDLGPILLEKNTSQL----DMEDVLDELPQEELS 211

  Fly   230 EAAVEAATATLTPNEAEVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNS------- 287
            :..:::.|:..:        .|::..:|..::.:.|.||:..:.::....|.:|:.|:       
  Fly   212 QPRLDSTTSPAS--------MENDVKSEMLDSCEGDDDFLPVDGQLMDLVAVATTPNTLESTAEE 268

  Fly   288 NASGHKYSCPHCPYTASKKFLITRH--SRSHDVEPSFK-------CSICERSFRSNVGLQNH-IN 342
            .|...:..|..|......:....:|  .....:|...|       |.||.::..|...|:.| ..
  Fly   269 KAKRGRMDCEKCGKVYRNRASYEKHLERECRRIERRVKVDKTTTTCDICNKTLSSATALKLHKEG 333

  Fly   343 THMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPY 407
            .|...||:.|..|.....|...|..| :..||:.:|.:||.|........:|:.|...| .|..:
  Fly   334 IHQNVKPYICDSCGKQLKTITALNEH-KLVHTESRPFECTVCKAGFKNRARLKAHYQIH-AEPSF 396

  Fly   408 QCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPT 472
            .|..|....|.......|.|:||.|::.:||:|.:.|.:|.:||.|.|.|:.: :| :.||||..
  Fly   397 VCNICGKKLQTRRTWNMHKVVHTEERRLKCDVCGALFKRSKTLKTHLLSHTGL-RP-YVCNYCGK 459

  Fly   473 TCGRKADLRVHIKHMHTSDVPMTCRRCGQQLPDR 506
            :....|:.|.|....|..:|.   :..|.:||.|
  Fly   460 SFACNANCRSHKLKKHPQEVQ---QEDGARLPSR 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 17/93 (18%)
C2H2 Zn finger 296..316 CDD:275368 3/21 (14%)
COG5048 321..>621 CDD:227381 57/194 (29%)
C2H2 Zn finger 324..344 CDD:275368 6/20 (30%)
C2H2 Zn finger 352..373 CDD:275368 5/20 (25%)
C2H2 Zn finger 381..401 CDD:275368 5/19 (26%)
zf-H2C2_2 394..415 CDD:463886 6/20 (30%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:463886 9/23 (39%)
C2H2 Zn finger 437..457 CDD:275368 9/19 (47%)
C2H2 Zn finger 467..485 CDD:275368 7/17 (41%)
C2H2 Zn finger 496..516 CDD:275370 4/11 (36%)
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
CG17568NP_609951.2 zf-AD 10..87 CDD:214871 14/83 (17%)
COG5048 <313..471 CDD:227381 49/161 (30%)
C2H2 Zn finger 314..335 CDD:275368 6/20 (30%)
C2H2 Zn finger 343..363 CDD:275368 5/20 (25%)
C2H2 Zn finger 371..391 CDD:275368 5/19 (26%)
C2H2 Zn finger 398..418 CDD:275368 5/19 (26%)
C2H2 Zn finger 426..446 CDD:275368 9/19 (47%)
C2H2 Zn finger 454..475 CDD:275368 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.

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