DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Cf2

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001350854.1 Gene:Cf2 / 33692 FlyBaseID:FBgn0000286 Length:537 Species:Drosophila melanogaster


Alignment Length:249 Identity:72/249 - (28%)
Similarity:114/249 - (45%) Gaps:47/249 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 EAEVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQ-NSNASG-----HKYSCPHCPYT 302
            |.:..|.::.|..:..:..::|.|  |:..:|.||....|.: |.||:|     |       |..
  Fly   256 EQQQREMQEQAQQQQVHHHQQDQD--LAGDQVALKVPPLTVKLNKNANGGAIVSH-------PQV 311

  Fly   303 ASKKFLITRHSRSHDVEPSFKCSICERSFRSN------------VGLQNHINTHMGNK-PHKCKL 354
            ..|:..::. |.|.||..    |:...:.::|            ||.|. :...:.:| .|||..
  Fly   312 IIKEEPLSL-SDSGDVVN----SVPVYAIQANPGVPAPASSGVLVGTQT-VPADLAHKIRHKCPD 370

  Fly   355 CESAFTTSGELVRHTRYKHT-------KEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHC 412
            |...|.|.|.|..| |..||       ||:|:.|:.|..:..:...|::|...||||:|:.|.:|
  Fly   371 CPKTFKTPGTLAMH-RKIHTGEADATPKERPYTCSYCGKSFTQSNTLKQHTRIHTGEKPFHCGYC 434

  Fly   413 --TYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKL-IHSVVDKP 463
              :::.:|.  |.:|:..|||||.|.|..|..||||.::|..|.. :|.:..:|
  Fly   435 EKSFSVKDY--LTKHIRTHTGEKPYTCPYCDKRFTQRSALTVHTTKLHPLXGRP 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334
C2H2 Zn finger 296..316 CDD:275368 3/19 (16%)
COG5048 321..>621 CDD:227381 51/166 (31%)
C2H2 Zn finger 324..344 CDD:275368 5/31 (16%)
C2H2 Zn finger 352..373 CDD:275368 8/20 (40%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
zf-H2C2_2 394..415 CDD:463886 9/22 (41%)
C2H2 Zn finger 409..429 CDD:275368 5/21 (24%)
zf-H2C2_2 422..446 CDD:463886 12/23 (52%)
C2H2 Zn finger 437..457 CDD:275368 8/20 (40%)
C2H2 Zn finger 467..485 CDD:275368
C2H2 Zn finger 496..516 CDD:275370
C2H2 Zn finger 524..544 CDD:275368
zf-H2C2_2 536..561 CDD:463886
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Cf2NP_001350854.1 COG5048 <366..>473 CDD:227381 41/109 (38%)
C2H2 Zn finger 368..388 CDD:275368 8/20 (40%)
C2H2 Zn finger 403..423 CDD:275368 4/19 (21%)
C2H2 Zn finger 431..451 CDD:275368 5/21 (24%)
zf-H2C2_2 443..468 CDD:463886 12/26 (46%)
C2H2 Zn finger 459..480 CDD:275368 8/20 (40%)
Blue background indicates that the domain is not in the aligned region.

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