DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and Zfp438

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:XP_017456046.1 Gene:Zfp438 / 307024 RGDID:1307214 Length:800 Species:Rattus norvegicus


Alignment Length:625 Identity:124/625 - (19%)
Similarity:217/625 - (34%) Gaps:165/625 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 CYIKTTPKKQKELQKKLKQAAAKPGKATRSVVSTATNKSINLRPAKS-------TPKATTSKPPP 150
            |::..:|:...||..|     ..|.|...::..:.||  ||.....|       :|..|.|....
  Rat   155 CHLSPSPQAHPELLHK-----PSPWKRMPTLNPSPTN--INTATVTSAIGQGDLSPLETDSCGDL 212

  Fly   151 EPKAISVRPARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPMDLERELEELVDEPD 215
            ||.||   ||.:....:.||.    ||.:.|....|   ::.|.    :|.....||:|.|....
  Rat   213 EPPAI---PAYSTENSSPQSL----PASMQKAGCAR---KETPT----KPAVASEELQEQVAPAH 263

  Fly   216 --ISSMVTELSDYTVDEAAVEAATATLTPNEAEVYEFEDNATTEDE----NADKK-------DVD 267
              :||.|..:|..|.|:..:..::...|....:|....:||.:...    |.:::       |..
  Rat   264 SVVSSTVQSVSVVTKDKLPILPSSRVKTTEVVKVEPDAENAESSSSGCRANCEERLSITEGFDAA 328

  Fly   268 FVLSNK--------------------EVKLKTASSTSQNSNASGHKYSCPH---CPYTASKKFLI 309
            ..::||                    ::.|...:..|......|.|:..|.   ......::.:|
  Rat   329 TEIANKTPALHGSKQSACKSAFCPVTKLDLNRKAKPSSGVKRRGRKWKVPDDILALQGKRRRCII 393

  Fly   310 ------TRHSRSHDVEP-SFKCSICERSFRSNV-------------------------GL-QNHI 341
                  ...:|::..|| ..|.....|.:||.:                         || |:.:
  Rat   394 GMCGDSIERARNNPPEPRDQKPRATSRKYRSIMPKPVIVLSALAPLASPAAMLSQAPSGLGQDVL 458

  Fly   342 NTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERP 406
            |..:   |.||             :...:..:...||.......::.:              ::|
  Rat   459 NNAL---PPKC-------------LSSKQSDNLAPKPSSALRNGFSGI--------------KKP 493

  Fly   407 -YQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKP--VFQCN 468
             :.||.|.|..|....|..||..||..:.|.|.||:..:.:..||.||..:|...::|  :..|.
  Rat   494 WHMCPVCNYHFQFKHHLLDHMNTHTNRRPYSCGICRKTYVRPGSLSAHMKLHHGDNRPKKLVCCE 558

  Fly   469 YCPTTCGRKADLRV---HIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYA 530
            :|....|.   :||   |:|.:|...:..      :..|...|.:...|:.:.:........|..
  Rat   559 FCAKVFGH---VRVYFGHLKEVHRVVIST------EPTPSELQSEDTPKNKDRDPSMQGPDSSLE 614

  Fly   531 SVTQRHLASHMLIHLDEK---PFHCDQC---PQAFRQRQLLRRHMNLVHNEEY--------QPPE 581
            ..|:..|....|::..::   ...|.:|   .|:|.:   ::.|:..||.||.        ||..
  Rat   615 RETKSSLEEDFLLNQADEVKLQIRCGRCQITAQSFAE---IKFHLLHVHGEEIQGRLQEVGQPGS 676

  Fly   582 PREKLHKCPSCPREFTHKGNLMRHMETHDDS-ANAREKRR 620
            ..:..|:     :::|.:...::...:.:|| |..|.||:
  Rat   677 RTDAPHQ-----KQYTERTKQVKPCASAEDSPAFPRGKRQ 711

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226 24/96 (25%)
C2H2 Zn finger 296..316 CDD:275368 3/28 (11%)
COG5048 321..>621 CDD:227381 68/347 (20%)
zf-C2H2 322..344 CDD:278523 8/47 (17%)
C2H2 Zn finger 324..344 CDD:275368 7/45 (16%)
zf-H2C2_2 337..361 CDD:290200 6/24 (25%)
C2H2 Zn finger 352..373 CDD:275368 1/20 (5%)
C2H2 Zn finger 381..401 CDD:275368 0/19 (0%)
zf-H2C2_2 394..415 CDD:290200 4/21 (19%)
C2H2 Zn finger 409..429 CDD:275368 8/19 (42%)
zf-H2C2_2 422..446 CDD:290200 9/23 (39%)
C2H2 Zn finger 437..457 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..485 CDD:275368 6/20 (30%)
C2H2 Zn finger 496..516 CDD:275370 3/19 (16%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:290200 6/30 (20%)
C2H2 Zn finger 552..573 CDD:275368 5/23 (22%)
zf-C2H2 587..609 CDD:278523 2/21 (10%)
C2H2 Zn finger 589..609 CDD:275368 1/19 (5%)
Zfp438XP_017456046.1 C2H2 Zn finger 497..517 CDD:275368 8/19 (42%)
zf-H2C2_2 509..534 CDD:290200 9/24 (38%)
C2H2 Zn finger 525..545 CDD:275368 7/19 (37%)
C2H2 Zn finger 557..575 CDD:275368 6/20 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24390
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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