DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Zfp362

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001178541.1 Gene:Zfp362 / 297879 RGDID:1306498 Length:418 Species:Rattus norvegicus


Alignment Length:471 Identity:106/471 - (22%)
Similarity:170/471 - (36%) Gaps:153/471 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 SKPPPEPKAISVRPARAAAAKAKQSAM-PPPP---------ALVVKVP----APRGRP------- 189
            |:..|..|.    |:|.|..:...... ||||         .|:.|:.    |.:.||       
  Rat     2 SRSSPSGKG----PSRMAEPRFNNPYFWPPPPTMPSQLDNLVLINKIKEQLMAEKIRPPHLPPTS 62

  Fly   190 --RKNPVIPKPEPMDLERELEEL-------------VDEPDISSMVTELSDYTVDEAAVEA--AT 237
              .:.|::..|.|.:..:.:..|             |.:||:               |:.|  ||
  Rat    63 ASSQQPLLVPPAPAESSQAVMSLPKLQQVPGLHPQSVPQPDV---------------ALHARPAT 112

  Fly   238 ATLTPNEAEVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYT 302
            :|:|                         ...||::    ..|.|||:::..:|...|.|..|.|
  Rat   113 STVT-------------------------GLGLSSR----TPAVSTSESTPGTGTGTSTPSTPTT 148

  Fly   303 ASKKFLITRHSR--SHDVEPSFKCSI-------------CERSFRSNVGLQN------------- 339
            .|:..||.....  |....|....||             .||. |..:..:|             
  Rat   149 TSQSRLIASSPTLISGITSPPLLDSIKTIQGHGLLGPPKSERG-RKKIKAENPGGPPVLVVPYPI 212

  Fly   340 --HINTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHT 402
              ...|....|.::||:|...|.|..|:..|:: .||:.|||||..|:.:....:.|.:|:..|.
  Rat   213 LASGETAKEGKTYRCKVCPLTFFTKSEMQIHSK-SHTEAKPHKCPHCSKSFANASYLAQHLRIHL 276

  Fly   403 GERPYQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDI--CKSRFTQSNSLKAHKLIHSVVDKPVF 465
            |.:||.|.:|..:.:.:..|::|..||||::.|:|..  |:..|||.::|::|            
  Rat   277 GVKPYHCSYCDKSFRQLSHLQQHTRIHTGDRPYKCPHPGCEKAFTQLSNLQSH------------ 329

  Fly   466 QCNYCPTTCGRKADLRVHIKHMHTSDVPMTCRRCGQQLPDRYQYKLHVKSH--EGEKCYSCKLCS 528
                               :..|..|.|..|..|.:...|....::|:.:|  :..|.|.|.:|.
  Rat   330 -------------------QRQHNKDKPYKCPNCYRAYSDSASLQIHLSAHAIKHAKAYCCSMCG 375

  Fly   529 YASVTQRHLASHMLIH 544
            .|..::.:|..||..|
  Rat   376 RAYTSETYLMKHMSKH 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 18/78 (23%)
C2H2 Zn finger 296..316 CDD:275368 6/21 (29%)
COG5048 321..>621 CDD:227381 62/256 (24%)
C2H2 Zn finger 324..344 CDD:275368 6/47 (13%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 4/19 (21%)
zf-H2C2_2 394..415 CDD:463886 8/20 (40%)
C2H2 Zn finger 409..429 CDD:275368 4/19 (21%)
zf-H2C2_2 422..446 CDD:463886 10/25 (40%)
C2H2 Zn finger 437..457 CDD:275368 7/21 (33%)
C2H2 Zn finger 467..485 CDD:275368 0/17 (0%)
C2H2 Zn finger 496..516 CDD:275370 4/19 (21%)
C2H2 Zn finger 524..544 CDD:275368 6/19 (32%)
zf-H2C2_2 536..561 CDD:463886 4/9 (44%)
C2H2 Zn finger 552..573 CDD:275368
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Zfp362NP_001178541.1 PRK12323 <27..>131 CDD:481241 26/147 (18%)
C2H2 Zn finger 227..247 CDD:275368 7/20 (35%)
zf-H2C2_2 239..264 CDD:463886 10/25 (40%)
zf-C2H2 253..275 CDD:395048 6/21 (29%)
C2H2 Zn finger 255..275 CDD:275368 4/19 (21%)
zf-H2C2_2 267..292 CDD:463886 8/24 (33%)
C2H2 Zn finger 283..303 CDD:275368 4/19 (21%)
SFP1 <305..357 CDD:227516 15/82 (18%)
C2H2 Zn finger 311..333 CDD:275368 7/52 (13%)
C2H2 Zn finger 341..361 CDD:275368 4/19 (21%)
C2H2 Zn finger 373..391 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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