DRSC/TRiP Functional Genomics Resources

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Protein Alignment CTCF and Zbtb40

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_937891.1 Gene:Zbtb40 / 230848 MGIID:2682254 Length:1258 Species:Mus musculus


Alignment Length:709 Identity:151/709 - (21%)
Similarity:246/709 - (34%) Gaps:159/709 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LNNFHKEIEGNSDEKVVNTILEAISAEAIDLDENGAE---------AGGSKPMEEAEADLDHAEE 73
            |.:.||...|      :..:::.::.......|:|.|         .|....:||.........:
Mouse   664 LCSVHKSFPG------LQPLMQELAHVGFLTKESGEERWKVTDGLHPGAKDKVEEVAKATGEDCQ 722

  Fly    74 AEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAAKPGKATRSVVSTATNKSINLRPAK 138
            |.|::|..|.            ...|::.:      |..:|.|..|.:|.|..|.:||.:..   
Mouse   723 ANEQKEQGEP------------GPVPEQPE------KDTSASPDSAKKSFVCKACDKSFHFY--- 766

  Fly   139 STPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPV--IPKPEPM 201
                          ..:.|...|...||::|            |.:..|...|...  :.|.:| 
Mouse   767 --------------CRLKVHMKRCRVAKSRQ------------VQSEEGSETKGSEKGLEKQQP- 804

  Fly   202 DLERELEELVDEPDISSMVTELSDYTVDEAAVEAATATLTPNEAEVYEFEDNATTEDENADKKDV 266
                :......|||......:....|.|....|.|.|:..........|::...:.:|...|...
Mouse   805 ----DARGTGGEPDAPKKKKKRLPVTCDLCGREFAHASGMQYHKLTEHFDEKPFSCEECGAKFAA 865

  Fly   267 DFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLITRHS-RSHDVEPSFKCSICERS 330
            :..|.| .::|.|..          ..:.|.||..|.::...:..|: :.|.....:.|..|:..
Mouse   866 NSTLKN-HLRLHTGD----------RPFMCKHCLMTFTQASALAYHTKKKHSEGKMYACQYCDAV 919

  Fly   331 FRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHTRYKHTK-EKPHKCTECTYASVELTKL 394
            |..::.|..|:.||.|:||:.|:.|...|..:..|..|....||. |.|:.|.:|..:...|...
Mouse   920 FAQSIELSRHVRTHTGDKPYVCRDCGKGFRQANGLSIHLHTFHTDIEDPYDCKKCRMSFSTLQDH 984

  Fly   395 RRHMTCHTGERPYQCPHC--TYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIH 457
            |:|:.....:..:.||.|  .:::..|  |:||||.|.|.|.:.|.||...:.|.:.|..|...|
Mouse   985 RKHIHEVHAKEYHPCPTCGKIFSAPSM--LERHMVTHVGGKPFSCGICNKAYQQLSGLWYHNRTH 1047

  Fly   458 SVVDKPVF-------------QCNYCPTTCGRKADLRVHIKHMHTSDVPMTCRRCGQQLPDRYQY 509
               ...||             ||:.|..|.....:.:.|||..||......|.:|.:..|.....
Mouse  1048 ---HPDVFAAQNHRSPKFSSLQCSSCDKTFSNTVEHKKHIKTEHTDVKFHECDQCKELFPTPALL 1109

  Fly   510 KLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFRQRQLLRRHMNLVHN 574
            ::|||         |:                  |...:||.|..|...||....|:.|:...|.
Mouse  1110 QVHVK---------CQ------------------HSGSQPFRCLYCAATFRFPGALQHHVTTEHF 1147

  Fly   575 EEYQPPEPREKLHKCPSCPREFTHKGNLMRHMET-HDDSANAREKRRRLKLGRNVRLQKDGT--- 635
            ::.:...|      |..|...||.:..|..|:|: |...|....:....::.:.:|..:...   
Mouse  1148 KQSESTFP------CELCGELFTSQAQLDSHLESEHPKVAGTESQAAASRMVQVIRAPEPAAPAE 1206

  Fly   636 -VITLIKDQ------YVDM-DRDQEENEEDDNPESYDLAEIEPENSEAEDADDDVETIV 686
             ||||.:.|      :|.: |....:|       |.:|..:     ..||..|...|::
Mouse  1207 QVITLEETQLAGSQVFVTLPDSQTSQN-------SSELVAV-----TVEDLLDGTVTLI 1253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226 17/91 (19%)
C2H2 Zn finger 296..316 CDD:275368 5/20 (25%)
COG5048 321..>621 CDD:227381 81/316 (26%)
zf-C2H2 322..344 CDD:278523 5/21 (24%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
zf-H2C2_2 337..361 CDD:290200 10/23 (43%)
C2H2 Zn finger 352..373 CDD:275368 5/20 (25%)
C2H2 Zn finger 381..401 CDD:275368 5/19 (26%)
zf-H2C2_2 394..415 CDD:290200 5/22 (23%)
C2H2 Zn finger 409..429 CDD:275368 9/21 (43%)
zf-H2C2_2 422..446 CDD:290200 11/23 (48%)
C2H2 Zn finger 437..457 CDD:275368 6/19 (32%)
C2H2 Zn finger 467..485 CDD:275368 4/17 (24%)
C2H2 Zn finger 496..516 CDD:275370 6/19 (32%)
C2H2 Zn finger 524..544 CDD:275368 1/19 (5%)
zf-H2C2_2 536..561 CDD:290200 6/24 (25%)
C2H2 Zn finger 552..573 CDD:275368 6/20 (30%)
zf-C2H2 587..609 CDD:278523 7/22 (32%)
C2H2 Zn finger 589..609 CDD:275368 7/20 (35%)
Zbtb40NP_937891.1 BTB 19..113 CDD:279045
BTB 25..113 CDD:197585
C2H2 Zn finger 827..848 CDD:275368 4/20 (20%)
C2H2 Zn finger 856..876 CDD:275368 4/20 (20%)
zf-H2C2_2 869..893 CDD:290200 8/34 (24%)
COG5048 <872..1078 CDD:227381 57/220 (26%)
C2H2 Zn finger 884..933 CDD:275368 11/48 (23%)
zf-H2C2_2 925..950 CDD:290200 10/24 (42%)
C2H2 Zn finger 941..960 CDD:275368 5/18 (28%)
C2H2 Zn finger 971..989 CDD:275370 5/17 (29%)
zf-C2H2 997..1019 CDD:278523 9/23 (39%)
C2H2 Zn finger 1027..1047 CDD:275368 6/19 (32%)
C2H2 Zn finger 1067..1086 CDD:275368 5/18 (28%)
C2H2 Zn finger 1096..1117 CDD:275368 7/47 (15%)
C2H2 Zn finger 1125..1144 CDD:275368 6/18 (33%)
C2H2 Zn finger 1156..1173 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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