DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and hinf-1

DIOPT Version :9

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_493579.2 Gene:hinf-1 / 173348 WormBaseID:WBGene00009553 Length:541 Species:Caenorhabditis elegans


Alignment Length:512 Identity:108/512 - (21%)
Similarity:182/512 - (35%) Gaps:122/512 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 PRKNPVIPKPEP--------MDLERELEELVDEPDISSMVTELSDYTVDEAAVEAAT--ATLTPN 243
            ||.|...|...|        ...::.|..::|..|..|.  :..|.....|.:.:||  :|.||.
 Worm    37 PRHNLYAPTAPPHHHHHHHQHQPQQHLHYMIDSQDSDSQ--DSVDSFRTPAPISSATRFSTHTPR 99

  Fly   244 EAEVYEFEDNATTEDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFL 308
            .:       .|::.|  ::..::...:.|..:.:.....:|.:............|..::|.|..
 Worm   100 AS-------RASSND--SESGELSEEVMNHWLPMTWCERSSDDPQVFTFVCLWGQCVSSSSSKDE 155

  Fly   309 ITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKL--CESAFTTSGELVRHT-- 369
            ...|...|       .|:.|...::.    ||:||      .:||:  |.....:..:|.||.  
 Worm   156 FVDHLFGH-------VSVIEEGVQNG----NHMNT------VQCKVRGCNKHLDSIFQLHRHVSM 203

  Fly   370 -------RYKHTKEKPHK-------------CTECTYASV--------------ELTKLRRHMTC 400
                   :.|.::....|             ||...|..:              .||:|..|:..
 Worm   204 HVFQADCQQKGSEALIEKEDYIGIESCGFEPCTNINYEGMLLNCQWEDCGMPFNSLTELFDHVGH 268

  Fly   401 H---------------TGER----PYQCPHCTYASQDMFKLKRHMVIHTGEKKYQCDICKSRFTQ 446
            |               .|::    |.:...||..:.....|:||...|:|||...|..|...|::
 Worm   269 HIDGVGDVDRIQQNFSNGDKKVVFPCKWTACTQVADSKANLRRHARHHSGEKVLACPFCARFFSR 333

  Fly   447 SNSLKAHKLIHSVVDK-----PVFQCNYCPTTCGRKADLRVHI-KHMHTSDVPMTCRRCGQQLPD 505
            .:.|..|.|..:::.|     ..:.|..|....|.:..|.:|: :|:    |.:||..|...|..
 Worm   334 RDKLYDHCLRRTILMKNPEMEDPYLCKLCQKRFGTEKALCMHVTRHL----VSLTCPLCSLGLGC 394

  Fly   506 RYQYKLHV--KSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFRQRQLLRRH 568
            |.:...|:  |.....|.:.|..||....|:..|..|.:.|.|.. :.|..||:.|:.::.|.:|
 Worm   395 RAELHRHLMTKHSRRSKDFKCDTCSKLFFTESELNRHAVYHSDVM-YSCKHCPEKFKWKKQLMKH 458

  Fly   569 MNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETHDDSANAREKRRRLKLG 625
            |. .|:|.:.|..     :.|..|.|.:|....|.||:        .|:.|.::..|
 Worm   459 MK-EHDENFNPSP-----YTCHLCDRTYTTGFALGRHL--------TRQHRLQIPYG 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 23ISL <116..206 CDD:293226 5/24 (21%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
COG5048 321..>621 CDD:227381 82/364 (23%)
zf-C2H2 322..344 CDD:278523 5/21 (24%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
zf-H2C2_2 337..361 CDD:290200 7/25 (28%)
C2H2 Zn finger 352..373 CDD:275368 6/31 (19%)
C2H2 Zn finger 381..401 CDD:275368 7/33 (21%)
zf-H2C2_2 394..415 CDD:290200 7/39 (18%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:290200 10/23 (43%)
C2H2 Zn finger 437..457 CDD:275368 6/19 (32%)
C2H2 Zn finger 467..485 CDD:275368 5/18 (28%)
C2H2 Zn finger 496..516 CDD:275370 6/21 (29%)
C2H2 Zn finger 524..544 CDD:275368 6/19 (32%)
zf-H2C2_2 536..561 CDD:290200 8/24 (33%)
C2H2 Zn finger 552..573 CDD:275368 7/20 (35%)
zf-C2H2 587..609 CDD:278523 7/21 (33%)
C2H2 Zn finger 589..609 CDD:275368 7/19 (37%)
hinf-1NP_493579.2 C2H2 Zn finger 299..316 CDD:275368 5/16 (31%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 359..379 CDD:275368 5/19 (26%)
C2H2 Zn finger 385..406 CDD:275368 5/20 (25%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 442..462 CDD:275368 7/20 (35%)
C2H2 Zn finger 473..494 CDD:275368 8/28 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.