DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and LOC1276238

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:XP_061505437.1 Gene:LOC1276238 / 1276238 VectorBaseID:AGAMI1_005134 Length:731 Species:Anopheles gambiae


Alignment Length:822 Identity:296/822 - (36%)
Similarity:407/822 - (49%) Gaps:220/822 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 PMEEA---EADLDHAE--EAEEEEEDDEDKYFIDDEGNCYIKTTPKKQKELQKKLKQAAAKPGKA 119
            |::||   :.|::..|  .|..|::|:...||:|.:||.|.:..                     
Mosquito    25 PIKEAKQEKLDMEDVELISAGLEDDDEGGCYFVDQKGNYYFQAN--------------------- 68

  Fly   120 TRSVVSTATNKSINLRPAKSTPKATTSKPPPEPKAISVRPARAAAAKAKQSAMPPPPALVVKVPA 184
                                                  ..|...|..|.|:              
Mosquito    69 --------------------------------------EDAELTAVDAGQT-------------- 81

  Fly   185 PRGRPRKNPVIPKPEPMDLERELEELVDEPDIS----SMVTELSDYTVDEAAVEAATATLTPNEA 245
                                 |.|.|.||||.|    |.|..::|         |..:||..|:.
Mosquito    82 ---------------------EFEGLTDEPDKSEEGVSYVLIMND---------ADKSTLVLNDE 116

  Fly   246 ---------EVYEFEDNATTEDENADKKDVDFVL-SNKEVKLKTASSTSQNSNASGHKYSCPHCP 300
                     |:|:||             |.|::: ..:|...||.:...:...::|..|.|.:|.
Mosquito   117 PSQGDSKDNEIYDFE-------------DPDYIVQEEQEPAKKTQTRGKRTQQSTGSTYMCNYCN 168

  Fly   301 YTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGEL 365
            ||::|.||::||.::|..:...||.:|||.|::...||||:|||.|.|||:||.|::.|||||||
Mosquito   169 YTSNKLFLLSRHLKTHSEDRPHKCVVCERGFKTLASLQNHVNTHTGTKPHRCKHCDNCFTTSGEL 233

  Fly   366 VRHTRYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHMVIHT 430
            :||.||:||.|:|||||||.||||||:||:||:..||||:|:|||||||||.|.|||.|||.|||
Mosquito   234 IRHIRYRHTHERPHKCTECDYASVELSKLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRIHT 298

  Fly   431 GEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRKADLRVHIKHMHTSDVPMT 495
            |||.|.||:|.:||||||||||||:||.|.:||||||..||||||||.|||:|::::||:|.|:.
Mosquito   299 GEKPYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLRIHVQNLHTADKPIK 363

  Fly   496 CRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFR 560
            |:||....||||.||:|.|:|||||||.|:.|.|||::.|||.||:|:|.|:||:.||||.|.||
Mosquito   364 CKRCDSTFPDRYSYKMHAKTHEGEKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQCAQTFR 428

  Fly   561 QRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETHDDSANAREKRRRLKLG 625
            |:|||:||||..||.:|..|.|:.|.|.||:|.|.|.|||||:|||..||..:...::...|:.|
Mosquito   429 QKQLLKRHMNYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRHMAMHDPESTVSKEMEALREG 493

  Fly   626 RNVRLQKDGTVITLIKDQY---VDMDRDQEENEEDDNPESYDLAEIEPENSEAEDADD------- 680
            |..::|     ||..::.|   .|.:.:::|.:|:|..|..|..|.|      ||.||       
Mosquito   494 RQKKVQ-----ITFEEEIYKGEEDYEGEEDEEDEEDEYEGDDTEEDE------EDEDDELAAGPL 547

  Fly   681 ---DVETIVSDPIRQRIKPAPIIINKQARLAASEKQ--------------------PMIINQRLR 722
               ||.|:.....:..:.....:.:|.::.|..||.                    |.....|..
Mosquito   548 GTSDVVTVEDGDGQYVVLEVIQLQDKDSKAAGMEKSRKKRGAPKRKATSPPAVATPPSTSRARTA 612

  Fly   723 SQRGTKTFH----IKEEPDNS--------------------DFTVEWQG-DDGEVMV----VELV 758
            ::..|.|..    .|:||..|                    :..:|.|| |.|:..:    |:|.
Mosquito   613 TRTATTTTRALRSAKKEPAESLDIDGINLVMVTGEPEDEKHEIAIEHQGADSGDEFILSTEVDLQ 677

  Fly   759 NGDEEVLVKHEPSANSKI-----------SAKNCFGFEDDDD 789
            .. |.::...|.:..|:.           :..|||||:||||
Mosquito   678 EA-EMMMSTFEDTKRSRYDVTISQAELEKNMSNCFGFDDDDD 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 4/85 (5%)
C2H2 Zn finger 296..316 CDD:275368 9/19 (47%)
COG5048 321..>621 CDD:227381 189/299 (63%)
C2H2 Zn finger 324..344 CDD:275368 10/19 (53%)
C2H2 Zn finger 352..373 CDD:275368 14/20 (70%)
C2H2 Zn finger 381..401 CDD:275368 14/19 (74%)
zf-H2C2_2 394..415 CDD:463886 14/20 (70%)
C2H2 Zn finger 409..429 CDD:275368 15/19 (79%)
zf-H2C2_2 422..446 CDD:463886 16/23 (70%)
C2H2 Zn finger 437..457 CDD:275368 15/19 (79%)
C2H2 Zn finger 467..485 CDD:275368 13/17 (76%)
C2H2 Zn finger 496..516 CDD:275370 11/19 (58%)
C2H2 Zn finger 524..544 CDD:275368 11/19 (58%)
zf-H2C2_2 536..561 CDD:463886 15/24 (63%)
C2H2 Zn finger 552..573 CDD:275368 15/20 (75%)
zf-C2H2 587..609 CDD:395048 14/21 (67%)
C2H2 Zn finger 589..609 CDD:275368 13/19 (68%)
LOC1276238XP_061505437.1 None

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