DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CTCF and znf710

DIOPT Version :10

Sequence 1:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster
Sequence 2:XP_002932284.1 Gene:znf710 / 100488876 XenbaseID:XB-GENE-981399 Length:670 Species:Xenopus tropicalis


Alignment Length:704 Identity:157/704 - (22%)
Similarity:260/704 - (36%) Gaps:174/704 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 AEAIDLDENGAEAGGSKPME----EAEADLDHAEEAEEEEEDDEDKYFIDDEGNCYIKTTPKKQK 103
            |...:..|||       |:|    |.|..|:.......|.::||   .:|.|     |.|.:|::
 Frog    50 ASRSEFSENG-------PIEAEQPEGEPYLNTGTRVAAEPQEDE---ALDSE-----KLTRRKKR 99

  Fly   104 ---ELQKKLKQAAAKPGKATRSVVSTATNKSINLRPAKSTPKATTSKPPPEPKAISVRPARAAAA 165
               .:..|:|....:.|:.....:                 ...|.:|..|.|....:|.:....
 Frog   100 PPVRVVPKIKYEKTEEGEEEEGKI-----------------YQVTVQPDKEEKEPEGKPLQNVQE 147

  Fly   166 KAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPMDLERELEEL-------------------V 211
            :|.:|::......::.:.:.|.|||:...:.:.:..::|.:.:.|                   .
 Frog   148 QASESSVQSSSVKMIDLGSFRRRPRRLRHLKERQRHEIETDYQHLQHLQHPVQNTYPLPSIPMIP 212

  Fly   212 DEPDISSMVTELSDYTVDEAAVEAATATLTPNEA--------------------EVYEFEDNATT 256
            ..|.:.:|..:.|          ..::.|.||:.                    |..|||.:...
 Frog   213 GNPSMENMQRQCS----------FGSSLLPPNDTVGPAVGSPKTEDHGQNYVWHEPNEFETDTAE 267

  Fly   257 EDENADKKDVDFVLSNKEVKLKTASSTSQNSNASGHKYSCPHCPYTASKKFLITRHSRSHDVEPS 321
            ..|...|..:|    ..::.::...|....:.....::.|..|..:.:.|:.:..|...|.....
 Frog   268 SIERNKKAQLD----RLDINVQIDDSYLVEAGDRQKRWQCRMCEKSYTSKYNLVTHILGHSGIKP 328

  Fly   322 FKCSICERSFRSNVGLQNHINTHMGNKPHKCKLCESAFTTSGELVRHT----------------- 369
            ..|..|.:.|:....||.|:.||.|.:||||::|..|||.:..|.||.                 
 Frog   329 HSCPHCNKLFKQPSHLQTHLLTHQGTRPHKCEVCNKAFTQTSHLKRHMLLHTDIKPYSCRFCGRG 393

  Fly   370 ----------RYKHTKEKPHKCTECTYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKR 424
                      ..||...:.|.|.||......||:|:||::.|.|...|||..|..:.....:|:.
 Frog   394 FAYPSELKAHEVKHENGRCHVCVECGLDFATLTQLKRHISSHQGPTMYQCMECNKSFHYRSQLQN 458

  Fly   425 HMVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRKADLRVHIKHMHT 489
            ||:.|...:.:.|..|...|:|.:.||.|.|.|..|.:  |:|.    .|||:..|..::|.   
 Frog   459 HMLKHQNVRPFVCKECGMEFSQIHHLKQHSLTHKGVKE--FKCE----VCGREFTLHANMKR--- 514

  Fly   490 SDVPMTCRRCGQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQ 554
                                  |:..|...:.:.|.:|....|.::.|.:||::|...|||.|..
 Frog   515 ----------------------HMLIHASVRPFQCHICFKTFVQKQTLKTHMIVHSPVKPFKCKV 557

  Fly   555 CPQAFRQRQLLRRHMNLVHNEEYQPPEPREKLHKCPSCPREFTHKGNLMRHMETHDDSANAREKR 619
            |.::|.:...|..||:|  :..|:|       .|||.|..:|..||||.|||             
 Frog   558 CGKSFNRMYNLLGHMHL--HAGYKP-------FKCPYCSSKFNLKGNLSRHM------------- 600

  Fly   620 RRLKLG-RNVRLQKDGTVITLIKDQYVDMDRDQEENEEDDNPESYDLAEIEPEN 672
             ::|.| .::.|.....::.|......|||..||..:.:::...|..||...||
 Frog   601 -KVKHGVMDIGLDSQDPMMDLPDQDARDMDGHQEMEDYEESSYGYREAENTAEN 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CTCFNP_648109.1 FAP 116..>202 CDD:429334 12/85 (14%)
C2H2 Zn finger 296..316 CDD:275368 4/19 (21%)
COG5048 321..>621 CDD:227381 91/326 (28%)
C2H2 Zn finger 324..344 CDD:275368 6/19 (32%)
C2H2 Zn finger 352..373 CDD:275368 8/47 (17%)
C2H2 Zn finger 381..401 CDD:275368 8/19 (42%)
zf-H2C2_2 394..415 CDD:463886 9/20 (45%)
C2H2 Zn finger 409..429 CDD:275368 5/19 (26%)
zf-H2C2_2 422..446 CDD:463886 7/23 (30%)
C2H2 Zn finger 437..457 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..485 CDD:275368 5/17 (29%)
C2H2 Zn finger 496..516 CDD:275370 1/19 (5%)
C2H2 Zn finger 524..544 CDD:275368 6/19 (32%)
zf-H2C2_2 536..561 CDD:463886 10/24 (42%)
C2H2 Zn finger 552..573 CDD:275368 7/20 (35%)
zf-C2H2 587..609 CDD:395048 12/21 (57%)
C2H2 Zn finger 589..609 CDD:275368 11/19 (58%)
znf710XP_002932284.1 SFP1 <228..375 CDD:227516 34/150 (23%)
C2H2 Zn finger 303..323 CDD:275368 4/19 (21%)
COG5048 <312..543 CDD:227381 67/261 (26%)
C2H2 Zn finger 331..351 CDD:275368 6/19 (32%)
C2H2 Zn finger 359..379 CDD:275368 8/19 (42%)
C2H2 Zn finger 387..407 CDD:275368 0/19 (0%)
C2H2 Zn finger 415..435 CDD:275368 8/19 (42%)
C2H2 Zn finger 443..463 CDD:275368 5/19 (26%)
C2H2 Zn finger 471..491 CDD:275368 8/19 (42%)
C2H2 Zn finger 499..519 CDD:275368 7/48 (15%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
zf-H2C2_2 540..564 CDD:463886 10/23 (43%)
C2H2 Zn finger 555..575 CDD:275368 7/21 (33%)
C2H2 Zn finger 583..602 CDD:275368 11/32 (34%)

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