DRSC/TRiP Functional Genomics Resources

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Protein Alignment qm and Ggps1

DIOPT Version :9

Sequence 1:NP_001163370.1 Gene:qm / 38816 FlyBaseID:FBgn0019662 Length:338 Species:Drosophila melanogaster
Sequence 2:NP_001318048.1 Gene:Ggps1 / 14593 MGIID:1341724 Length:300 Species:Mus musculus


Alignment Length:312 Identity:178/312 - (57%)
Similarity:230/312 - (73%) Gaps:12/312 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHWLLIPGEKLAQIGDIVQMLHNSS 72
            ::|||:|:     :.|||:|:.|:.|:||||.||:|:.||||||.:|.:||..|.::.:||||:|
Mouse     1 MEKTKEKA-----ERILLEPYRYLLQLPGKQVRSKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS 60

  Fly    73 LLIDDIEDNSILRRGVPVAHSIYGVASTINAANYALFLALEKVQQLDHPEATKVYTEQLLELHRG 137
            ||||||||:|.||||.|||||||||.|.||:|||..||.||||..||||:|.|::|.||||||:|
Mouse    61 LLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQG 125

  Fly   138 QGMEIYWRDSFTCPSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRDDY 202
            ||::|||||::|||:|.:||.|.::||||||.||:.||||||..|||...|...|||:|||||||
Mouse   126 QGLDIYWRDTYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLDTLGLFFQIRDDY 190

  Fly   203 CNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRTHDIEVKKYCITLLEKLG 267
            .||..|||:|||||.||||||||.||.|||:.::.:..||.:||||||.:|::||||:..||.:|
Mouse   191 ANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVQYLEDVG 255

  Fly   268 SFQYTRKVLESLDAEARSEVARLGSNPYMDRLLNKLLSWKTSDSASITQSNQ 319
            ||.|||..|..|:|:|..::...|.||.:..|:..|       |...|:.|:
Mouse   256 SFAYTRHTLRELEAKAYKQIEACGGNPSLVALVKHL-------SKMFTEENK 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qmNP_001163370.1 polyprenyl_synt 30..267 CDD:278763 152/236 (64%)
Ggps1NP_001318048.1 polyprenyl_synt 9..251 CDD:395277 154/241 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849729
Domainoid 1 1.000 327 1.000 Domainoid score I1178
eggNOG 1 0.900 - - E1_COG0142
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H31267
Inparanoid 1 1.050 363 1.000 Inparanoid score I2169
Isobase 1 0.950 - 0 Normalized mean entropy S1150
OMA 1 1.010 - - QHG62161
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007302
OrthoInspector 1 1.000 - - oto94660
orthoMCL 1 0.900 - - OOG6_103487
Panther 1 1.100 - - LDO PTHR12001
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2131
SonicParanoid 1 1.000 - - X7
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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