DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eco and Polh

DIOPT Version :9

Sequence 1:NP_648106.1 Gene:eco / 38812 FlyBaseID:FBgn0035766 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_109640.1 Gene:Polh / 80905 MGIID:1891457 Length:694 Species:Mus musculus


Alignment Length:526 Identity:101/526 - (19%)
Similarity:167/526 - (31%) Gaps:155/526 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GSGRPSRM------ATPRLSERKRQLFGS-PRSRLRQINDDEDDADVDSLGV-----------LP 52
            |..:|:|.      :.|       |||.. |..::|.:......:.::.||:           ..
Mouse   227 GLNKPNRQTLVSHGSVP-------QLFSQMPIRKIRSLGGKLGASVIEVLGIEYMGDLTQFTESQ 284

  Fly    53 LKTHVAANRKGRSLFAAVPG--KSSSSANSSPETNKENKKTRGGVMTATAEQ----LPQL-FTAT 110
            |::|. ..:.|..|:|...|  .........|:|...:|...|....||.||    |.|| ....
Mouse   285 LQSHF-GEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLALELE 348

  Fly   111 MRLNSNSSSNSRNSSPRQTRVQRKRADSSMSSPTSSSEGTPSSRARNSIRRS---PRTFSAQKDP 172
            .||..:.:.|.|.::.....: |.:.|..:|                |:||.   ||..:.:...
Mouse   349 ERLTKDRNDNDRVATQLVVSI-RFQGDRRLS----------------SLRRCCALPRYDAHKMSQ 396

  Fly   173 DAFS-----SPESFQTRLSKVAAMLMKGQDSRSMLEKSKKKHNHSLKTTAQVHTTKPKKTSP--- 229
            |||:     :....||..|....||.                         :..||....:|   
Mouse   397 DAFAAIRNCNTSGIQTEWSPPLTMLF-------------------------LCATKFSAAAPPAC 436

  Fly   230 -------AEESQSDDEKPSSSKNSRKNTEVRETRSSQIISPKTRNRRRPFTSADINCKTLKAAAH 287
                   :.:|....:.|.:|..:|       |:.|....|.::.......|.     ..|||..
Mouse   437 TDITAFLSSDSSCQPKVPIASSETR-------TQGSGPAVPTSKEAATSLASF-----FQKAAKK 489

  Fly   288 LHENMRSYDEEKTAAVKLENSRSRSKSPVEVFKSNDDAVKRNTGNTNNKTAKS-----SEVATAK 347
            ......|:....||..||      |..|..||:|:     :.||:.:....||     ::::.:.
Mouse   490 QRMKETSFVPLNTATEKL------SSKPSLVFQSS-----QTTGSQSFFKQKSLLLQHTQLSNSA 543

  Fly   348 RPESPGSSMK-----IDVEVPESDEEASNHKPQKRQHPETSTPVAPSADADSGSPQSKMRKVT-- 405
            .|:.|.:|..     :..|..:|..:....||...:...|...||..:.....||....::||  
Mouse   544 APDPPQASPAAQPSCLPAECVDSGPDDGAVKPVSSKAVSTEMNVAGDSPNVLDSPAYNSQEVTQR 608

  Fly   406 ----------LSSSIPTMAFYSHSG-------------EAVTKSRRRPSISKNSLKQPTKISPTS 447
                      ..|.:|......|:.             ...:|.:..|::|....:.|...|.:|
Mouse   609 ATEDQVLCEKCDSLVPVWDMPEHTDYHFALELQKSFLQPCTSKPQAIPAVSPQGKRNPKSPSASS 673

  Fly   448 ----RP 449
                ||
Mouse   674 SKRLRP 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecoNP_648106.1 zf-C2H2_3 839..878 CDD:290589
NAT_SF 945..>1008 CDD:173926
Acetyltransf_13 982..1043 CDD:290591
PolhNP_109640.1 DinP 7..>325 CDD:223466 20/105 (19%)
PolY_Pol_eta 10..427 CDD:176456 48/249 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..598 6/32 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 651..694 8/29 (28%)
PIP-box. /evidence=ECO:0000250|UniProtKB:Q9Y253 682..689
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4551
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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