DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and HNRNPDL

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_112740.1 Gene:HNRNPDL / 9987 HGNCID:5037 Length:420 Species:Homo sapiens


Alignment Length:376 Identity:76/376 - (20%)
Similarity:125/376 - (33%) Gaps:135/376 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDV--------VKNYGFVHMETEQQGRDAIQNLNGYT 64
            |:|||.|...|...:|.....::|.||:|.:        .:.:||| :..:....|.:..|..:.
Human   149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFV-LFKDAASVDKVLELKEHK 212

  Fly    65 LNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNY 121
            |:...|..:.||:.:. ..|..|:|||.|:..|...:::|.|..:|.:...::.        |.:
Human   213 LDGKLIDPKRAKALKG-KEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF 276

  Fly   122 GFVHLDCVGDVQDAIKELNGRVVDGQPLKV-------QVSTSRVRPKPGMGDPEQCYR------- 172
            .|:                 ...|.:|:|.       |:.:.:...|  :..|::.||       
Human   277 CFI-----------------TYTDEEPVKKLLESRYHQIGSGKCEIK--VAQPKEVYRQQQQQQK 322

  Fly   173 CGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYD 237
            .||            |:|.|||        ||.|.|..|:.             .....||.  :
Human   323 GGR------------GAAAGGR--------GGTRGRGRGQG-------------QNWNQGFN--N 352

  Fly   238 YYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYD-TMFSRRSP 301
            |||:.:.:....|                              |..::.|...||| |.:     
Human   353 YYDQGYGNYNSAY------------------------------GGDQNYSGYGGYDYTGY----- 382

  Fly   302 PPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYAPY 352
                 :.|...||    .||.|:|    .::....:..||.......|.||
Human   383 -----NYGNYGYG----QGYADYS----GQQSTYGKASRGGGNHQNNYQPY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 18/72 (25%)
RRM1_2_CoAA_like 87..152 CDD:409779 14/79 (18%)
hnRNP-R-Q <88..>258 CDD:273732 36/191 (19%)
HNRNPDLNP_112740.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..83
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..120
RRM1_hnRPDL 149..224 CDD:410152 18/75 (24%)
RRM2_hnRPDL 234..308 CDD:409998 16/92 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..348 14/67 (21%)
Necessary for interaction with TNPO1. /evidence=ECO:0000269|PubMed:9524220 342..420 22/140 (16%)
Necessary for its nuclear import and export 396..420 4/27 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 398..420 3/21 (14%)
Blue background indicates that the domain is not in the aligned region.

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