DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and SPOM_SPAC222.18

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001343068.1 Gene:SPOM_SPAC222.18 / 9407033 PomBaseID:SPAC222.18 Length:111 Species:Schizosaccharomyces pombe


Alignment Length:77 Identity:24/77 - (31%)
Similarity:34/77 - (44%) Gaps:7/77 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDV-------VKNYGFVHMETEQQGRDAIQNLNGYTLN 66
            |:|.|.....:|..|...|||:|.:|.||:       ...|.||..|..::...|.:.:....:.
pombe    20 LYIRNFGTDMRARTLGQAFEKWGRIVRCDIPISSNPQAHRYAFVEFEEREKAELAHEKMRNAKIG 84

  Fly    67 EFAIKVEAAKSR 78
            ...|.||.||||
pombe    85 NDIIFVEWAKSR 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 18/70 (26%)
RRM1_2_CoAA_like 87..152 CDD:409779
hnRNP-R-Q <88..>258 CDD:273732
SPOM_SPAC222.18NP_001343068.1 RRM_SF 19..94 CDD:473069 20/73 (27%)
Blue background indicates that the domain is not in the aligned region.

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