DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and NAM8

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_011954.1 Gene:NAM8 / 856486 SGDID:S000001128 Length:523 Species:Saccharomyces cerevisiae


Alignment Length:203 Identity:45/203 - (22%)
Similarity:77/203 - (37%) Gaps:49/203 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQG-RDAI--QNLNGYTLNEFA 69
            :|::|:||.......:|.::...|   |.::  |...:...|...| |.::  :|..||...:|.
Yeast    55 QLYMGDLDPTWDKNTVRQIWASLG---EANI--NVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFP 114

  Fly    70 IKVEAAKS-----RRAPNTPTTK---------------------------IFVGNLTDKTRAPEV 102
            ....||.:     ...||.|..|                           ||||:|.......::
Yeast   115 SSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQL 179

  Fly   103 RELF-QKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV 158
            .||| .:|.:.....||        :.||||......:.|.|:.|:.|..::|:.:||..::.:.
Yeast   180 FELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQ 244

  Fly   159 RPKPGMGD 166
            :...|..|
Yeast   245 QHVSGNND 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 15/67 (22%)
RRM1_2_CoAA_like 87..152 CDD:409779 22/100 (22%)
hnRNP-R-Q <88..>258 CDD:273732 24/88 (27%)
NAM8NP_011954.1 RRM1_NGR1_NAM8_like 55..144 CDD:410023 21/93 (23%)
RRM2_SECp43_like 162..241 CDD:409781 22/78 (28%)
RRM3_NGR1_NAM8_like 312..383 CDD:409782
Blue background indicates that the domain is not in the aligned region.

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