DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and IST3

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_012270.1 Gene:IST3 / 854821 SGDID:S000001444 Length:148 Species:Saccharomyces cerevisiae


Alignment Length:75 Identity:21/75 - (28%)
Similarity:41/75 - (54%) Gaps:12/75 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRD--AIQNLNGY 63
            ::||||:.:....::..:|.:||  |..||:        ::.||.:::.|.|...  |:.||||:
Yeast    33 IYIGNLNRELTEGDILTVFSEYG--VPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLNGF 95

  Fly    64 TLNEFAIKVE 73
            .:...|:|::
Yeast    96 KIGGRALKID 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 21/73 (29%)
RRM1_2_CoAA_like 87..152 CDD:409779
hnRNP-R-Q <88..>258 CDD:273732
IST3NP_012270.1 RRM_ist3_like 22..109 CDD:409845 21/75 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.