DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lark and SR30

DIOPT Version :9

Sequence 1:	NP_523957.1	Gene:	lark / 38811	FlyBaseID:	FBgn0011640	Length:	352	Species:	Drosophila melanogaster
Sequence 2:	NP_172386.3	Gene:	SR30 / 837433	AraportID:	AT1G09140	Length:	268	Species:	Arabidopsis thaliana

Alignment Length:	289	Identity:	78/289 - (26%)
Similarity:	106/289 - (36%)	Gaps:	68/289 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    88 IFVGNLTDKTRAPEVRELFQKYGTVVECDI-----VRNYGFVHLDCVGDVQDAIKELNGRVVDGQ 147
            |:||||....|..||.:||.|||.:|:.|:     ...|.||..:...|..|||...:|...||.
plant     9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGC 73

  Fly   148 PLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGR 212
            .|:|:::....|..|.:......|...|                      :|.....||..:.|.
plant    74 RLRVEIAHGGRRFSPSVDRYSSSYSASR----------------------APSRRSDYRVLVTGL 116

  Fly   213 DPYPPPPPPPPFLRDRI-----------------MDGFRDYDYYD------RRFE--DSRDLYER 252
                ||......|:|.:                 |.|..||..||      |:.:  :.|:.:..
plant   117 ----PPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSS 177

  Fly   253 RYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFS--RRSPPPPRSSNGMSRYGS 315
            .|  .|:|::....:||      .|..|.|.||.|.|||....:|  .||..|.||.:..||..|
plant   178 AY--IRVREYESRSVSR------SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLS 234

  Fly   316 PTPHGYEDFSRDAFDERMISSRGMRGPSP 344
            .:...|...||.  ..|..|....|..||
plant   235 RSRSLYSSVSRS--QSRSKSRSRSRSNSP 261

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779
		RRM1_2_CoAA_like	87..152	CDD:409779	26/68 (38%)
		hnRNP-R-Q	<88..>258	CDD:273732	48/199 (24%)
SR30	NP_172386.3	RRM	<1..165	CDD:223796	45/181 (25%)
		RRM1_SF2_plant_like	8..79	CDD:241043	27/69 (39%)
		RRM2_SF2_plant_like	109..184	CDD:241046	17/80 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23147
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010