Protein Alignment lark and RS41

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_200017.2
• Gene: RS41 / 835279
• AraportID: AT5G52040
• Length: 357
• Species: Arabidopsis thaliana
• Alignment Length: 376
• Identity: 99/376 - (26%)
• Similarity: 151/376 - (40%)
• Gaps: 63/376 - (16%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFA--IK 71
            :|.||.:...:.::|..||.|||.|...|:...:.||:||.|:...|||:.|:.:......  ::
plant     4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLR 68

  Fly    72 VEAAK-----------SRRAPN--TPTTKIFVGNL-TDKTRAPEVRELFQKYGTVVECDIVRNYG 122
            ||..|           |||:.:  .|:..:||.|. ...||..::...|:.||.:|...|.||:.
plant    69 VEWTKNDRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFA 133

  Fly   123 FVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGD---PEQCYRCGRSGHWSKECP 184
            |:..:...|...|:...|...:..:.:.|:.:   |:.....|:   ||:  |..||....:..|
plant   134 FIQYEAQEDATRALDATNSSKLMDKVISVEYA---VKDDDSRGNGYSPER--RRDRSPDRRRRSP 193

  Fly   185 RLY----GSAGGGREPPSPLSAGGYRDRM---YGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRR 242
            ..|    ||...|| ..||::  ..|:|.   |||.    ...|.|:.|.|:..   ||...|||
plant   194 SPYRRERGSPDYGR-GASPVA--HKRERTSPDYGRG----RRSPSPYKRARLSP---DYKRDDRR 248

  Fly   243 FE-----DSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPP 302
            .|     ::..:..|..:..|.....|||..:|.....||.             |:.....||||
plant   249 RERVASPENGAVRNRSPRKGRGESRSPPPYEKRRESRSPPP-------------YEKRRESRSPP 300

  Fly   303 P--PRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRRYAP 351
            |  .|.....||..|...:|..:......:  :.:.||..|...|.|..:|
plant   301 PYEKRRERSRSRSKSSPENGQVESPGQIME--VEAGRGYDGADSPIRESSP 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	20/65 (31%)
		RRM1_2_CoAA_like	87..152	CDD:409779	16/65 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	48/185 (26%)
RS41	NP_200017.2	RRM1_AtRSp31_like	2..73	CDD:409680	22/68 (32%)
		RRM	9..289	CDD:223796	78/294 (27%)
		RRM2_AtRSp31_like	97..166	CDD:409899	17/71 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1563362at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_104638
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820