Protein Alignment lark and RS40

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001190837.1
• Gene: RS40 / 828654
• AraportID: AT4G25500
• Length: 350
• Species: Arabidopsis thaliana
• Alignment Length: 364
• Identity: 96/364 - (26%)
• Similarity: 145/364 - (39%)
• Gaps: 67/364 - (18%)

  Fly     9 LFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFA---- 69
            :|.||.:...:..:|..||.|||.|...|:...:.||:||.|:...|||:.|:.:   ||.
plant     4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRF---EFGRKGR 65

  Fly    70 -IKVEAAKSRRAPN--------------TPTTKIFVGNL-TDKTRAPEVRELFQKYGTVVECDIV 118
             ::||..||.|..:              .|:..:||.|. .|.||..::.:.|:.||.:|...|.
plant    66 RLRVEWTKSERGGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIR 130

  Fly   119 RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKEC 183
            ||:.|:..:...|...|:...|...:..:.:.|:.:......:.....||:  |..||....:..
plant   131 RNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPER--RRDRSPERRRRS 193

  Fly   184 PRLY----GSAGGGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFE 244
            |..|    ||...|| ..||::|  ||......| |.....|.|:.:.|  .|..:|. .|||..
plant   194 PSPYKRERGSPDYGR-GASPVAA--YRKERTSPD-YGRRRSPSPYKKSR--RGSPEYG-RDRRGN 251

  Fly   245 DSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNG 309
            ||.   .||.:.:....:...|.::||.|  .|..|              .|.:.||     .||
plant   252 DSP---RRRERVASPTKYSRSPNNKRERM--SPNHS--------------PFKKESP-----RNG 292

  Fly   310 MSRYGSPTPHGYEDFSRDAFDERMISSRGMRGPSPPGRR 348
            :....||...  .:.||.:.:...:.|     |...|||
plant   293 VGEVESPIER--RERSRSSPENGQVES-----PGSIGRR 324

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	22/68 (32%)
		RRM1_2_CoAA_like	87..152	CDD:409779	17/65 (26%)
		hnRNP-R-Q	<88..>258	CDD:273732	48/174 (28%)
RS40	NP_001190837.1	RRM1_AtRSp31_like	2..73	CDD:240680	24/71 (34%)
		RRM_SF	98..167	CDD:388407	18/68 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1563362at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_104638
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820