Sequence 1: | NP_523957.1 | Gene: | lark / 38811 | FlyBaseID: | FBgn0011640 | Length: | 352 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001190041.1 | Gene: | SR34a / 824105 | AraportID: | AT3G49430 | Length: | 300 | Species: | Arabidopsis thaliana |
Alignment Length: | 316 | Identity: | 80/316 - (25%) |
---|---|---|---|
Similarity: | 112/316 - (35%) | Gaps: | 105/316 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 88 IFVGNLTDKTRAPEVRELFQKYGTVVECDI-----VRNYGFVHLDCVGDVQDAIKELNGRVVDGQ 147
Fly 148 PLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGG------------------R 194
Fly 195 EPPSPLSAGGYRDRM------------------YGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDR 241
Fly 242 RFEDS--RDLYER------RYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSR 298
Fly 299 RSPPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGM---RGPSPPGRRYAP 351 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lark | NP_523957.1 | RRM1_2_CoAA_like | 8..73 | CDD:409779 | |
RRM1_2_CoAA_like | 87..152 | CDD:409779 | 24/68 (35%) | ||
hnRNP-R-Q | <88..>258 | CDD:273732 | 52/218 (24%) | ||
SR34a | NP_001190041.1 | RRM_SF | 9..79 | CDD:418427 | 25/69 (36%) |
RRM2_SF2_plant_like | 122..197 | CDD:410014 | 15/89 (17%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR23147 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.010 |