DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Alyref

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001381323.1 Gene:Alyref / 690585 RGDID:1594679 Length:256 Species:Rattus norvegicus


Alignment Length:136 Identity:39/136 - (28%)
Similarity:63/136 - (46%) Gaps:25/136 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDI-----VRNYGF--VHLDCVGDVQDAIKELNGRVV 144
            |:.|.||.......:::|||.::||:.:..:     .|:.|.  ||.:...|...|:|:.||..:
  Rat   107 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 171

  Fly   145 DGQPLKVQVSTSRV----RPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGY 205
            ||:|:.:|:.||::    ||...:.      |.|.:.:      |..||.|||.....  :.||.
  Rat   172 DGRPMNIQLVTSQIDTQRRPAQSIN------RGGMTRN------RGSGSFGGGGTRRG--TRGGS 222

  Fly   206 RDRMYG 211
            |.|..|
  Rat   223 RGRGRG 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 21/71 (30%)
hnRNP-R-Q <88..>258 CDD:273732 38/135 (28%)
AlyrefNP_001381323.1 RRM_THOC4 107..180 CDD:410081 21/72 (29%)
Blue background indicates that the domain is not in the aligned region.

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