DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Rbm4b

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_079993.2 Gene:Rbm4b / 66704 MGIID:1913954 Length:357 Species:Mus musculus


Alignment Length:347 Identity:115/347 - (33%)
Similarity:166/347 - (47%) Gaps:75/347 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |||||||..:....|:|:|||:||.|:|||::|||||||:|.:....|||:||:.|.|:...|.|
Mouse     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            ||:|::   :..:||:.|||::......|:|..|::||.|:|||||::|.|||::...|..:||:
Mouse    68 EASKNK---SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129

  Fly   138 ELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECP-----------RLYGSAG 191
            .|:.....|:.:.||:||||:|..|||||...|||||:.||||||||           ..|....
Mouse   130 GLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQY 194

  Fly   192 GGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQT 256
            |....|..:   ||.:.||..|.|..                  .|||            :||  
Mouse   195 GAVRTPYTM---GYGESMYYNDAYGA------------------LDYY------------KRY-- 224

  Fly   257 SRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPHGY 321
             |:|.:.                  ::.:.:.:..|:......|..|...|       |..|...
Mouse   225 -RVRSYE------------------AVAAAAAASAYNYAEQTMSHLPQVQS-------SAVPSHL 263

  Fly   322 EDFSRDAFDERMISSRGMRGPS 343
            ...|.|.:|..::.:.|....|
Mouse   264 NSTSVDPYDRHLLQNSGSAATS 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 34/64 (53%)
RRM1_2_CoAA_like 87..152 CDD:409779 24/64 (38%)
hnRNP-R-Q <88..>258 CDD:273732 62/180 (34%)
Rbm4bNP_079993.2 RRM1_RBM4 2..68 CDD:410018 34/64 (53%)
RRM2_RBM4 78..144 CDD:410019 25/65 (38%)
PTZ00368 <145..>181 CDD:173561 23/35 (66%)
ZnF_C2HC 161..176 CDD:197667 11/14 (79%)
Interaction with TNPO3. /evidence=ECO:0000250 196..357 25/151 (17%)

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