DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Rbm24

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001074894.1 Gene:Rbm24 / 666794 MGIID:3610364 Length:236 Species:Mus musculus


Alignment Length:93 Identity:27/93 - (29%)
Similarity:45/93 - (48%) Gaps:12/93 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 NTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138
            :|..||||||.|...|....:|:.|:.:|.:.|..::        |.||||.:......:.|.|:
Mouse     7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

  Fly   139 LNGRVVDGQPLKVQVSTSRVRPK---PG 163
            .| .::||:...|.::....:|:   ||
Mouse    72 PN-PIIDGRKANVNLAYLGAKPRIMQPG 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 21/72 (29%)
hnRNP-R-Q <88..>258 CDD:273732 24/87 (28%)
Rbm24NP_001074894.1 RRM_RBM24_RBM38_like 11..86 CDD:409818 23/75 (31%)
Necessary for interaction with EIF4E. /evidence=ECO:0000250|UniProtKB:Q9BX46 175..199
Blue background indicates that the domain is not in the aligned region.

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