DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and myef2

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001025455.2 Gene:myef2 / 641483 ZFINID:ZDB-GENE-051120-114 Length:553 Species:Danio rerio


Alignment Length:430 Identity:96/430 - (22%)
Similarity:139/430 - (32%) Gaps:152/430 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNL--DEKTQATELRALFEKYGTVVECDVVKN-------YGFVHMETEQQGRDAIQ----- 58
            ::||.|:  |:|.||.: ..:.||.|.|...::.|:       .|.|..:.|:..:.||:     
Zfish    82 RVFISNIPYDKKWQAIK-DLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVMSKH 145

  Fly    59 NLNGYTLN-------EFAIKVEAAKSR--------------------RAPNTP------------ 84
            :|||..||       |.|.:|.....|                    ..||.|            
Zfish   146 DLNGRPLNIKEDPDGEHARRVLQRSGRMYGGGRGQDSSGINIPPSIANNPNIPHEIISALQAGRL 210

  Fly    85 TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDI-------VRNYGFVHLDCVGDVQDAIKELNGR 142
            ...|||.||..|....:::|:|...|||...|:       .|..|.|..:...:...||...||:
Zfish   211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQ 275

  Fly   143 VVDGQPLKVQVSTSRVRP---KPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREP-PSPLSA- 202
            ::..:.:.|::....:.|   :|....|              :.||..|..|.|..| ..|::| 
Zfish   276 MLFDRQMHVKMDDKSLPPDDFRPVEKSP--------------QLPRGLGGIGMGLGPGGQPINAN 326

  Fly   203 --------------------------GGYR--DRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYY 239
                                      ||:.  |.|.|                  |.||...|..
Zfish   327 CLSGSSMGPGGMDGGCSNMNRMSGMGGGFSGIDCMAG------------------MGGFSGRDMS 373

  Fly   240 DRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPP 304
            ..|.   .|:| |.......|||      .|..:.:..:...|.  .|:..|:..|         
Zfish   374 MGRM---GDMY-RSGMGGMDRDF------GRNDLGMSRSFGDSF--SSLGGGFGGM--------- 417

  Fly   305 RSSNGMSRYGSPTPHGYEDFSR--DAFDERMISSRGM-RG 341
             .::||...||....|.....|  ..|| ||.||..| ||
Zfish   418 -GNSGMGPMGSGLGMGNMGMDRMNSGFD-RMSSSMDMSRG 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 24/85 (28%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/71 (27%)
hnRNP-R-Q <88..>258 CDD:273732 44/209 (21%)
myef2NP_001025455.2 RRM1_MYEF2 82..157 CDD:410059 22/75 (29%)
RRM2_MYEF2 212..287 CDD:410061 20/74 (27%)
RRM3_MYEF2 477..553 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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