Protein Alignment lark and pabpc1a

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001026846.1
• Gene: pabpc1a / 606498
• ZFINID: ZDB-GENE-030131-3238
• Length: 634
• Species: Danio rerio
• Alignment Length: 460
• Identity: 101/460 - (21%)
• Similarity: 159/460 - (34%)
• Gaps: 153/460 - (33%)

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:||.|||:......|...|..:|.::.|.||      |.|||||.||.:....||:.:||
Zfish    96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160

  Fly    63 YTLNEFAIKVEAAKSRR-------APNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-- 118
            ..||:..:.|...|||:       |.....|.:::.|..:.....:::|:|.|||..:...::
Zfish   161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD 225

  Fly   119 -----RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKV------------------QVSTSRVRP 160
                 :.:|||..:...|.|.|:.|:||:.::|:.:.|                  |:...|:..
Zfish   226 DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTR 290

  Fly   161 KPGMG----------DPEQCYR----------------CGRSGHWSKEC---PR----------- 185
            ..|:.          |.|:..:                .|||..:...|   |.
Zfish   291 YQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 355

  Fly   186 -------LYGSAGGGREPPSPLSAGGYRDRMYG--------RDPYPPPPPPPPFLRDRIMDGFRD 235
                   ||.:....:|.........|..||..        .:||.|.||...|:. .|...
Zfish   356 RIVATKPLYVALAQRKEERQAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMA-AIPQA--- 416

  Fly   236 YDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRS 300
                     .:|..|   |.||::....|.|  |.....:.|....::.:.:|         |.|
Zfish   417 ---------QNRAAY---YPTSQLAQLRPSP--RWATQGVRPQHFQNMPNAAV---------RPS 458

  Fly   301 PPPPRSSNGMSRYGSPTPHGYEDFSRDAFDERMISSRGM----RGPSP---------------PG 346
            .|.|::.|.: |..|..|             ||::|:.|    .||.|               |.
Zfish   459 APRPQTFNPV-RPASQVP-------------RMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQ 509

  Fly   347 RRYAP 351
            .:|||
Zfish   510 YKYAP 514

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	25/70 (36%)
		RRM1_2_CoAA_like	87..152	CDD:409779	17/89 (19%)
		hnRNP-R-Q	<88..>258	CDD:273732	44/249 (18%)
pabpc1a	NP_001026846.1	PABP-1234	11..614	CDD:130689	101/460 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910