DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and Srsf4

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001356237.1 Gene:Srsf4 / 57317 MGIID:1890577 Length:496 Species:Mus musculus


Alignment Length:353 Identity:78/353 - (22%)
Similarity:119/353 - (33%) Gaps:105/353 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRR---------------- 79
            ||||.    :.||||..:..:...||:..|||..|....:.||.|:..|                
Mouse    35 GTVVG----QRYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRR 95

  Fly    80 ------APNTPTT-KIFVGNLTDKTRAPEVRELFQKYGTVVECDI---VRNYGFVHLDCVGDVQD 134
                  .|.|.|. ::.|.||:.:....::::..::.|.|...|.   .:|.|.:......|::.
Mouse    96 SGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKR 160

  Fly   135 AIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSP 199
            |:::|:|..|:|:.:::      |..||| ....:.|...||...|:...| :......|...|.
Mouse   161 ALEKLDGTEVNGRKIRL------VEDKPG-SRRRRSYSRSRSHSRSRSRSR-HSRKSRSRSGSSK 217

  Fly   200 LSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPP 264
            .|....|.|                               .|....||.....|.| ||.|    
Mouse   218 SSHSKSRSR-------------------------------SRSGSHSRSKSRSRSQ-SRSR---- 246

  Fly   265 PPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRS--------------SNGMSRYGS 315
               |::|            :|.|.|:...:....|||...||              |.|.::..|
Mouse   247 ---SKKE------------KSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHS 296

  Fly   316 PTPHGYEDFSRDAFDERMISSRGMRGPS 343
            |:.|  :..||....||.......|..|
Mouse   297 PSRH--DSKSRSRSQERRAEEERRRSVS 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 14/41 (34%)
RRM1_2_CoAA_like 87..152 CDD:409779 14/67 (21%)
hnRNP-R-Q <88..>258 CDD:273732 33/172 (19%)
Srsf4NP_001356237.1 RRM_SF <42..92 CDD:473069 14/49 (29%)
RRM2_SRSF4_like 109..180 CDD:410012 15/76 (20%)
U2AF_lg 250..>361 CDD:273727 20/87 (23%)

Return to query results.
Submit another query.