DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Srsf4

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001356237.1 Gene:Srsf4 / 57317 MGIID:1890577 Length:496 Species:Mus musculus


Alignment Length:353 Identity:78/353 - (22%)
Similarity:119/353 - (33%) Gaps:105/353 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 GTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRR---------------- 79
            ||||.    :.||||..:..:...||:..|||..|....:.||.|:..|                
Mouse    35 GTVVG----QRYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRR 95

  Fly    80 ------APNTPTT-KIFVGNLTDKTRAPEVRELFQKYGTVVECDI---VRNYGFVHLDCVGDVQD 134
                  .|.|.|. ::.|.||:.:....::::..::.|.|...|.   .:|.|.:......|::.
Mouse    96 SGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKR 160

  Fly   135 AIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSP 199
            |:::|:|..|:|:.:::      |..||| ....:.|...||...|:...| :......|...|.
Mouse   161 ALEKLDGTEVNGRKIRL------VEDKPG-SRRRRSYSRSRSHSRSRSRSR-HSRKSRSRSGSSK 217

  Fly   200 LSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPP 264
            .|....|.|                               .|....||.....|.| ||.|    
Mouse   218 SSHSKSRSR-------------------------------SRSGSHSRSKSRSRSQ-SRSR---- 246

  Fly   265 PPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRS--------------SNGMSRYGS 315
               |::|            :|.|.|:...:....|||...||              |.|.::..|
Mouse   247 ---SKKE------------KSRSPSKDNKSRSRSRSPDKSRSKSKDHAEDKLQNNDSAGKAKSHS 296

  Fly   316 PTPHGYEDFSRDAFDERMISSRGMRGPS 343
            |:.|  :..||....||.......|..|
Mouse   297 PSRH--DSKSRSRSQERRAEEERRRSVS 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 14/41 (34%)
RRM1_2_CoAA_like 87..152 CDD:409779 14/67 (21%)
hnRNP-R-Q <88..>258 CDD:273732 33/172 (19%)
Srsf4NP_001356237.1 RRM_SF <42..77 CDD:388407 13/34 (38%)
RRM2_SRSF4_like 109..180 CDD:241044 15/76 (20%)
U2AF_lg 250..>361 CDD:273727 20/87 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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