DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and rbm4.1

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_955999.1 Gene:rbm4.1 / 573001 ZFINID:ZDB-GENE-030131-3902 Length:419 Species:Danio rerio


Alignment Length:441 Identity:140/441 - (31%)
Similarity:189/441 - (42%) Gaps:145/441 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |:|:|||...|.|.|:|:||.:||.:.|||:|||:|||||:::.:..:|||||:.|.||..|:.|
Zfish     3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVKNFGFVHMDSKSEADEAIQNLHHYMLNGMAMNV 67

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            |.:|.:  |.| :||..|||::......|:|..|::||.|||||||::|.|||::.|.|..:||.
Zfish    68 EMSKGK--PKT-STKPHVGNISSSCTNQELRAKFEEYGPVVECDIVKDYAFVHMERVEDAMEAIS 129

  Fly   138 ELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPS---- 198
            .|:.....|:.:.|::||||:|..||||:...|||||:.||||||||  ....|..||.||    
Zfish   130 GLDNTAFQGKLMSVKLSTSRLRTAPGMGERTGCYRCGQEGHWSKECP--LDQNGSYREGPSSEGF 192

  Fly   199 ----------------------PLSAG------------GYRDRMYGRD---------------- 213
                                  |..||            ||....|||.                
Zfish   193 GPVRFDSGGDRGRGFHRGFSGEPAYAGSFAPSHGFTRGAGYAVPGYGRGAGFESAMGYGMPAGYG 257

  Fly   214 ----------------------PYPPPPPPPPFLR----DRIMDGFRDYDYYDR---------RF 243
                                  .||...|..|..|    :|  |.:...|:|::         .|
Zfish   258 VGADNSMAPVYGSEAAYGTSGMAYPGALPAYPIRRPPYEER--DPYGVVDFYEKYRARPYGGSYF 320

  Fly   244 EDSRDLYERRYQTSRMRDFPPPPIS----------------RREPMPLPPTLSGSL--------- 283
            ||.|.:         ....||||.|                .|.|:|.||..:.|.         
Zfish   321 EDRRAV---------QPPVPPPPTSTPVVRERLPSNLVDPYERHPLPPPPAPTSSYYVRERSPVR 376

  Fly   284 RSCSVSRGYDTMFSRRSPPP--PRSSNGMSRYGSPTPHGYEDFSRDAFDER 332
            |:...:.||....||.||..  ||::            .| |..||.:.||
Zfish   377 RAPHEAEGYAYERSRLSPISVLPRTA------------AY-DVPRDPYAER 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 33/64 (52%)
RRM1_2_CoAA_like 87..152 CDD:409779 26/64 (41%)
hnRNP-R-Q <88..>258 CDD:273732 74/258 (29%)
rbm4.1NP_955999.1 RRM1_RBM4 2..68 CDD:241050 33/64 (52%)
RRM2_RBM4 78..144 CDD:241051 27/65 (42%)
ZnF_C2HC 161..176 CDD:197667 11/14 (79%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 322..341 7/27 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 349..371 6/21 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8906
eggNOG 1 0.900 - - E1_KOG0109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 204 1.000 Inparanoid score I3706
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 1 1.000 - - FOG0002310
OrthoInspector 1 1.000 - - otm25261
orthoMCL 1 0.900 - - OOG6_104638
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4630
SonicParanoid 1 1.000 - - X1736
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.860

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