DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and DAZ3

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_065097.2 Gene:DAZ3 / 57054 HGNCID:15965 Length:438 Species:Homo sapiens


Alignment Length:62 Identity:15/62 - (24%)
Similarity:20/62 - (32%) Gaps:13/62 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PAWMSGFCPAMFR-ATFD-----CRGSSDTVRFFTTMVGLRLAS------IGFFSGDFRNQL 53
            |.|.. ||....: |..|     ||...|...:.|...|...:.      :..||.:.|..|
Human    16 PDWRQ-FCELHAQVAAVDFAHKFCRFLRDNPTYDTPDAGTSFSRHFAANFLAVFSEEVRRVL 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 13/58 (22%)
RRM1_2_CoAA_like 87..152 CDD:409779
hnRNP-R-Q <88..>258 CDD:273732
DAZ3NP_065097.2 RRM_DAZL 35..116 CDD:410073 9/42 (21%)
PABP-1234 <40..247 CDD:130689 7/37 (19%)
Daz 242..262 CDD:465893
Daz 266..286 CDD:465893
Daz 290..310 CDD:465893
Daz 314..334 CDD:465893
Daz 338..358 CDD:465893
Daz 362..382 CDD:465893
Daz 386..406 CDD:465893
Blue background indicates that the domain is not in the aligned region.

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