DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lark and cirbpa

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_001017797.1 Gene:cirbpa / 550495 ZFINID:ZDB-GENE-050417-329 Length:185 Species:Danio rerio


Alignment Length:149 Identity:42/149 - (28%)
Similarity:60/149 - (40%) Gaps:40/149 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN--------YGFVHLDCVGDVQDAIKELNGRV 143
            |:|:|.|:..|....:.:.|.|||.:....:.||        :|||..:...|.:||::.:||:.
Zfish     6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKS 70

  Fly   144 VDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGG---- 204
            |||:.::|..:     .|.|.|..      ||||....     |...||||........||    
Zfish    71 VDGRTIRVDEA-----GKGGGGGG------GRSGGGGS-----YRGGGGGRGGGGGFFRGGRGRG 119

  Fly   205 ------------YRDRMYG 211
                        |.||.||
Zfish   120 GGGGGYGGGDRSYGDRSYG 138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779
RRM1_2_CoAA_like 87..152 CDD:409779 22/72 (31%)
hnRNP-R-Q <88..>258 CDD:273732 41/148 (28%)
cirbpaNP_001017797.1 RRM_SF 5..83 CDD:473069 23/81 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.