Protein Alignment lark and PABPC3

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_112241.2
• Gene: PABPC3 / 5042
• HGNCID: 8556
• Length: 631
• Species: Homo sapiens
• Alignment Length: 180
• Identity: 49/180 - (27%)
• Similarity: 83/180 - (46%)
• Gaps: 28/180 - (15%)

  Fly     4 AGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV------KNYGFVHMETEQQGRDAIQNLNG 62
            :|...:|:.|||:......|......:|.::.|:||      |.|||||.||.:....||:.:||
Human    96 SGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160

  Fly    63 YTLNEFAIKVEAAKSR---------RAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV 118
            ..||...:.|...|||         ||...|  .:::.|..:......:::||.|:|..:...::
Human   161 MLLNGRKVFVGQFKSRKEREAELGARAKEFP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 223

  Fly   119 -------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPK 161
                   :.:|||..:...|.|.|:.|:||:.::|:    |:...|.:.|
Human   224 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK----QIYVGRAQKK 269

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	23/70 (33%)
		RRM1_2_CoAA_like	87..152	CDD:409779	15/71 (21%)
		hnRNP-R-Q	<88..>258	CDD:273732	18/81 (22%)
PABPC3	NP_112241.2	PABP-1234	11..610	CDD:130689	49/180 (27%)