DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and hnrnpa1

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_012812298.1 Gene:hnrnpa1 / 496507 XenbaseID:XB-GENE-493963 Length:362 Species:Xenopus tropicalis


Alignment Length:239 Identity:63/239 - (26%)
Similarity:104/239 - (43%) Gaps:46/239 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFV-HMETEQQGRDAIQNLNGY 63
            |||||.|..:|....||..||::||:.:|.|:::        :||| :..|::.  ||..:...:
 Frog    15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYSSTDEV--DAAMSARPH 77

  Fly    64 TLNEFAIKVEAAKSRRAPNTP-----TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV----- 118
            .::...::.:.|.||...:.|     ..|||||.:.:.|....:||.|::||.:...:|:     
 Frog    78 KVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEHHLREYFEQYGKIEVIEIMTDRGS 142

  Fly   119 ---RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSR---------VRPKPGMGDPEQCY 171
               |.:.||..: ..|..|.|.......|:....:|:.:.|:         .|.:.|.|:     
 Frog   143 GKKRGFAFVTFE-DHDSVDKIVIQKYHTVNNHNCEVRKALSKQEMASVSGSQRGRGGSGN----- 201

  Fly   172 RCGRSGHWSKECPRLYGSAGGGREPPSPLSAGGYRDRMYGRDPY 215
            ..||.|..:..    :|..||..   |....||:.:|.||.|.|
 Frog   202 FSGRGGFGNDN----FGGRGGNF---SSNRGGGFGNRGYGGDGY 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 21/73 (29%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/72 (26%)
hnRNP-R-Q <88..>258 CDD:273732 37/145 (26%)
hnrnpa1XP_012812298.1 RRM1_hnRNPA1 12..92 CDD:410154 22/78 (28%)
RRM_SF 105..184 CDD:473069 21/79 (27%)
HnRNPA1 <315..>334 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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