DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and Hrb87F

DIOPT Version :10

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:235 Identity:63/235 - (26%)
Similarity:99/235 - (42%) Gaps:49/235 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHMETEQQGR--DAIQNLNG 62
            |||||.||.:|....|:|.|||:|.:|:..|:|:        :||:   |..|..  |..||...
  Fly    25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFI---TYSQSYMIDNAQNARP 86

  Fly    63 YTLNEFAIKVEAAKSRR---APNTPTT--KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV---- 118
            :.::...::.:.|..|:   :||...|  |:|||.|.|......:||.|:.:|.:|..:||    
  Fly    87 HKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKD 151

  Fly   119 ----RNYGFVHLDCVGDVQDAIKE----LNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGR 175
                |.:.|:..|....|...|.:    :..:.:|.:....:....|.....|.|.|....|.|:
  Fly   152 TGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQ 216

  Fly   176 ------SGHWSKECPR----LYGSAGGGREPPSPLSAGGY 205
                  .|.|..:..:    .:|.||||         ||:
  Fly   217 GDRGQGGGGWGGQNRQNGGGNWGGAGGG---------GGF 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 24/74 (32%)
RRM1_2_CoAA_like 87..152 CDD:409779 19/76 (25%)
hnRNP-R-Q <88..>258 CDD:273732 33/140 (24%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 25/79 (32%)
RRM_SF 116..188 CDD:473069 19/71 (27%)

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