Protein Alignment lark and Rbm4b

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001007015.2
• Gene: Rbm4b / 474154
• RGDID: 1359343
• Length: 357
• Species: Rattus norvegicus
• Alignment Length: 347
• Identity: 115/347 - (33%)
• Similarity: 166/347 - (47%)
• Gaps: 75/347 - (21%)

  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |||||||..:....|:|:|||:||.|:|||::|||||||:|.:....|||:||:.|.|:...|.|
  Rat     3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 67

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            ||:|::   :..:||:.|||::......|:|..|::||.|:|||||::|.|||::...|..:||:
  Rat    68 EASKNK---SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIR 129

  Fly   138 ELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCGRSGHWSKECP-----------RLYGSAG 191
            .|:.....|:.:.||:||||:|..|||||...|||||:.||||||||           ..|....
  Rat   130 GLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRTGRVADFTEQYNEQY 194

  Fly   192 GGREPPSPLSAGGYRDRMYGRDPYPPPPPPPPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQT 256
            |....|..:   ||.:.||..|.|..                  .|||            :||
  Rat   195 GAVRTPYTM---GYGESMYYNDAYGA------------------LDYY------------KRY-- 224

  Fly   257 SRMRDFPPPPISRREPMPLPPTLSGSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSRYGSPTPHGY 321
             |:|.:.                  ::.:.:.:..|:......|..|...|       |..|...
  Rat   225 -RVRSYE------------------AVAAAAAASAYNYAEQTMSHLPQVQS-------SAVPSHL 263

  Fly   322 EDFSRDAFDERMISSRGMRGPS 343
            ...|.|.:|..::.:.|....|
  Rat   264 NSTSVDPYDRHLLQNSGSAATS 285

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	34/64 (53%)
		RRM1_2_CoAA_like	87..152	CDD:409779	24/64 (38%)
		hnRNP-R-Q	<88..>258	CDD:273732	62/180 (34%)
Rbm4b	NP_001007015.2	RRM1_RBM4	2..68	CDD:241050	34/64 (53%)
		RRM2_RBM4	78..144	CDD:241051	25/65 (38%)
		ZnF_C2HC	161..176	CDD:197667	11/14 (79%)
		Interaction with TNPO3. /evidence=ECO:0000250	196..357		25/151 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	74	1.000	Domainoid score	I8934
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	191	1.000	Inparanoid score	I3794
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1563362at2759
OrthoFinder	1	1.000	-	-		FOG0002310
OrthoInspector	1	1.000	-	-		oto95741
orthoMCL	1	0.900	-	-		OOG6_104638
Panther	1	1.100	-	-	LDO	PTHR23147
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1736
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	11	10.970