Protein Alignment lark and trv

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001163754.3
• Gene: trv / 43362
• FlyBaseID: FBgn0085391
• Length: 651
• Species: Drosophila melanogaster
• Alignment Length: 279
• Identity: 60/279 - (21%)
• Similarity: 102/279 - (36%)
• Gaps: 58/279 - (20%)

  Fly     7 FKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNLNGY 63
            |.:|:|:|..:.:..:||..|..:|.:.:|.||        |.||||....:.:...||..:||.
  Fly   312 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQ 376

  Fly    64 TLNEFAIKVEAAKSRRAP-----------------NTPTT-KIFVGNLTDKTRA--PEV-RELFQ 107
            .|...:|:...| :|:.|                 ::|:. .::||.:.....|  .|| ::.|.
  Fly   377 WLGSRSIRTNWA-TRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFA 440

  Fly   108 KYGTVVECDIVRN--YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQC 170
            .||.:.|..:.::  |.||..........||..::...::.||:|......       .|||...
  Fly   441 PYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKE-------SGDPNNA 498

  Fly   171 YRCGRSGHWSKEC-----PRLYGSAGGGREPPSPLSAGGYRDRMYGRDP-YP----------PPP 219
            .........|...     |...|:|.........|:|.|.   .|...| ||          |..
  Fly   499 QTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGC---WYSPTPTYPASSATAAAVTPAA 560

  Fly   220 PPPPFLRDRIMDGFRDYDY 238
            .....::::.:.|.:.|.:
  Fly   561 ASAAAVQNQFLQGIQGYHF 579

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	21/72 (29%)
		RRM1_2_CoAA_like	87..152	CDD:409779	17/69 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	34/172 (20%)
trv	NP_001163754.3	RRM2_TIA1_like	313..387	CDD:409789	21/73 (29%)
		RRM3_TIA1_like	416..489	CDD:409790	17/72 (24%)