Protein Alignment lark and msi

DIOPT Version :10

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_733108.2
• Gene: msi / 43087
• FlyBaseID: FBgn0011666
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 225
• Identity: 58/225 - (25%)
• Similarity: 100/225 - (44%)
• Gaps: 35/225 - (15%)

  Fly     2 PGAGTFKLFIGNLDEKTQATELRALFEKYGTVVECDVVKN--------YGFVHME----TEQQGR 54
            |..|  |||:|.|..:|.:.:|:..|..:|||.:..::|:        :||:..:    .|:..:
  Fly   200 PAPG--KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLK 262

  Fly    55 DAIQNLNGYTLNEFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV- 118
            ..|..|:|..::.   |....|:|......|.|||||.::..|.|.||:..|.::|.|.|..::
  Fly   263 VPIHTLDGKKIDP---KHATPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLM 324

  Fly   119 -------RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYR---- 172
                   |.:|||..: ..||.|.:.|::...:..:    :|...:.:||..:....|..:
  Fly   325 DQQTKRHRGFGFVTFE-NEDVVDRVCEIHFHTIKNK----KVECKKAQPKEAVTPAAQLLQKRIM 384

  Fly   173 CGRSGHWSKECP-RLYGSAGGGREPPSPLS 201
            .|..|......| :|.|:.|.|....:||:
  Fly   385 LGTLGVQLPTAPGQLIGARGAGVATMNPLA 414

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	19/76 (25%)
		RRM1_2_CoAA_like	87..152	CDD:409779	21/72 (29%)
		hnRNP-R-Q	<88..>258	CDD:273732	33/127 (26%)
msi	NP_733108.2	RRM_SF	204..278	CDD:473069	19/76 (25%)
		RRM2_MSI	292..365	CDD:240769	22/77 (29%)