Protein Alignment lark and B52

DIOPT Version :9

• Sequence 1: NP_523957.1
• Gene: lark / 38811
• FlyBaseID: FBgn0011640
• Length: 352
• Species: Drosophila melanogaster
• Sequence 2: NP_001014619.2
• Gene: B52 / 41670
• FlyBaseID: FBgn0004587
• Length: 355
• Species: Drosophila melanogaster
• Alignment Length: 354
• Identity: 79/354 - (22%)
• Similarity: 115/354 - (32%)
• Gaps: 112/354 - (31%)

  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            ::::|.|....:..:|...|:.||...:..:...||||..|..:...||:..|||..|....:.|
  Fly     5 RVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 69

  Fly    73 EAAK------------------------------------SRRAPNTPTT-KIFVGNLTDKTRAP 100
            |.|:                                    ||..|...|. ::.|.||:.:....
  Fly    70 EPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEYRLIVENLSSRVSWQ 134

  Fly   101 EVRELFQKYGTVVECDI---VRNYGFVHLDCVGDVQDAIK-----ELNGRVVDGQPLKVQVSTSR 157
            ::::..::.|.|...|.   .||.|.|....:.|::.||:     |||||       ::.:...|
  Fly   135 DLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTELNGR-------RIHLVEDR 192

  Fly   158 VRPKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGR-EPPSPLSAGGYRDRMYGRDPYPPPPPP 221
                          |.||||          |..|.|| ...|..|....|.|...|
  Fly   193 --------------RGGRSG----------GGGGSGRGRSRSSSSRSRSRSRRRSR--------- 224

  Fly   222 PPFLRDRIMDGFRDYDYYDRRFEDSRDLYERRYQTSRMRDFPPPPISRREPMPLPPTLSGSLRSC 286
                              .||...||.....|.::...|.....|:..|.     .:.|.|.:|.
  Fly   225 ------------------SRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRS-----RSRSRSNKSR 266

  Fly   287 SVSRGYDTMFSR---RSPPPPRSSNGMSR 312
            .||:......||   |||...|.|...||
  Fly   267 DVSKSKSKSHSRTRSRSPKRERDSRSRSR 295

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lark	NP_523957.1	RRM1_2_CoAA_like	8..73	CDD:409779	17/64 (27%)
		RRM1_2_CoAA_like	87..152	CDD:409779	18/72 (25%)
		hnRNP-R-Q	<88..>258	CDD:273732	38/178 (21%)
B52	NP_001014619.2	RRM1_SRSF4_like	5..74	CDD:240783	20/68 (29%)
		RRM2_SRSF4_like	120..191	CDD:241044	18/77 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910