DRSC/TRiP Functional Genomics Resources

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Protein Alignment lark and rbm4.3

DIOPT Version :9

Sequence 1:NP_523957.1 Gene:lark / 38811 FlyBaseID:FBgn0011640 Length:352 Species:Drosophila melanogaster
Sequence 2:XP_005172323.1 Gene:rbm4.3 / 406277 ZFINID:ZDB-GENE-040426-1938 Length:362 Species:Danio rerio


Alignment Length:397 Identity:134/397 - (33%)
Similarity:178/397 - (44%) Gaps:114/397 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KLFIGNLDEKTQATELRALFEKYGTVVECDVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKV 72
            |:|||||.::.:..||::||.:||||.||.::||:.||||:..:....||:||:.|.|:...|.|
Zfish    24 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKNFAFVHMDDRKSATKAIKNLHLYKLHGTPINV 88

  Fly    73 EAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRNYGFVHLDCVGDVQDAIK 137
            ||:   |..|....|:.|.|: :|....|:|.||:.||||.||.|::|:.|||::...:..||||
Zfish    89 EAS---RGKNQGPVKLHVANV-EKGTDDELRALFEDYGTVAECAIIKNFAFVHMNNSDEAMDAIK 149

  Fly   138 ELNGRVVDGQPLKVQVSTSRVR-PKPGMGDPEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLS 201
            .|:.....|:.:.||:|.||.| .:...|.|:       :|:|....|      |...|||    
Zfish   150 GLDNTEFQGKRIHVQISKSRPRGEEDDYGHPD-------AGYWPPRYP------GERPEPP---- 197

  Fly   202 AGGYRDRMYGRDPYPPPPPPPPFLR-----DRIMDGF---RD-YDYYDR--------RFEDSR-- 247
              ||....||..|.||||||||..|     ||....:   || .|||::        .::|.|  
Zfish   198 --GYPRGRYGYPPGPPPPPPPPPPRRSPYPDRAAPAYERQRDVVDYYEKYRARPYGVAYDDRRPG 260

  Fly   248 -----------------------DLYERRYQTSRMRDFPPPPIS---------RREPMPLPPTLS 280
                                   |.|||       |..||||.|         ||.| |.||..:
Zfish   261 GIPPPPPPPSSAIMRDRMPGNGLDPYER-------RPLPPPPASFYARDRSPIRRAP-PAPPAPA 317

  Fly   281 GSLRSCSVSRGYDTMFSRRSPPPPRSSNGMSR---YGSPTPHGYEDFSRDAFDERMISSRGMRGP 342
            |:        ||....||.||.      .|||   |..|.|       ||.:.:|       ..|
Zfish   318 GN--------GYSYERSRLSPV------SMSRAPMYSVPRP-------RDPYADR-------AAP 354

  Fly   343 SPPGRRY 349
            .||..||
Zfish   355 PPPPARY 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
larkNP_523957.1 RRM1_2_CoAA_like 8..73 CDD:409779 29/64 (45%)
RRM1_2_CoAA_like 87..152 CDD:409779 25/64 (39%)
hnRNP-R-Q <88..>258 CDD:273732 66/212 (31%)
rbm4.3XP_005172323.1 RRM_SF 23..89 CDD:302621 29/64 (45%)
RRM_SF 100..164 CDD:302621 25/64 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0109
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 204 1.000 Inparanoid score I3706
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1563362at2759
OrthoFinder 1 1.000 - - FOG0002310
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23147
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1736
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.930

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